hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj01101/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00238 ( 1452 res) mfj01101 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EMP24_GP25L emp24/gp25L/p24 family 84.5 2.2e-21 1 FYVE FYVE zinc finger 51.7 1.6e-11 1 RUN RUN domain -9.2 0.046 1 Vicilin_N Vicilin N terminal region -72.3 0.46 1 DUF164 Uncharacterized ACR, COG1579 -76.1 0.62 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein -77.2 0.7 1 Myosin_tail_1 Myosin tail -532.7 0.68 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RUN 1/1 59 184 .. 1 174 [] -9.2 0.046 Vicilin_N 1/1 466 611 .. 1 183 [] -72.3 0.46 TPR_MLP1_2 1/1 405 614 .. 1 271 [] -77.2 0.7 Myosin_tail_1 1/1 229 1050 .. 1 863 [] -532.7 0.68 DUF164 1/1 959 1180 .. 1 235 [] -76.1 0.62 FYVE 1/1 1142 1206 .. 1 77 [] 51.7 1.6e-11 EMP24_GP25L 1/1 1356 1440 .. 1 92 [] 84.5 2.2e-21 Alignments of top-scoring domains: RUN: domain 1 of 1, from 59 to 184: score -9.2, E = 0.046 *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls + le ll +k++ a+ ++k+ ++++ mFLJ00238 59 KFSYKLEYLLQFDQKEK---------------ASLLGSKKDYWDYFC 90 sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi l +++ ++ ++ ++ + e + mFLJ00238 91 A-----------------------CLAKVKGANDGIRFVRSISE-----L 112 ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS +t++g+gR A+iR +L ++L l++ ++++++ +Y + ++ p mFLJ00238 113 RTSLGKGR--AFIRYSLVHQRLADTLQQCFMNTKVTSDWYYARSPFLKP- 159 deegCeillslLqgLsaldFsLdlkfe<-* + + L L+ ++F+L++++ mFLJ00238 160 -KLS-SDIVGQLYELTEVQFDLAPRGY 184 Vicilin_N: domain 1 of 1, from 466 to 611: score -72.3, E = 0.46 *->pGRrnYeDDPqqrYEqCqRRCesetr............GqrEQqqCE +G ++ E q R +++++ + ++ +++ + r+Q++ + mFLJ00238 466 SGKKQ---------ESAQLRRQLQESlahlssveeelaEARQQEK-Q 502 eRCkeqykEeqqqqRqReEDPQrrYeeCqqrCqqeETEeRhrptCqQrCe R ++q+ E++ +Q e + + Q mFLJ00238 503 HREEKQLLEQEATSLTW--QLQ--------------LLETQLGQVSQLVS 536 rrYEkeqqqQQKRYEEQQREDEEKYEERmKEEDN..KRDPqqRqyqeCQq E+ +q m E D + R q e + mFLJ00238 537 DLEEQKKQL-------------------MQERDHlsQRVGTLEQLAEVHG 567 RCqqQEQrPrrqQQCqReCREQYqEqqerGeeenknPQWReeeeersEEG q E P+++QQC Re EQ + e e + Q e + + mFLJ00238 568 PPQSAE-MPEKRQQCLRE--EQVN-NSTVSEAEQEELQ--KELQNMVDRN 611 <-* mFLJ00238 - - TPR_MLP1_2: domain 1 of 1, from 405 to 614: score -77.2, E = 0.7 *->afvekssaLrsekkeieslrekNLVKKSQieamitqlqtlrnDlekq +f+e + +L+ e ++ e +++++l + mFLJ00238 405 KFQELKGKLQALEGENTEAQEL-------NRQQSIKLEQ-------- 436 aesakeaqsnYerelikhaetseeLtkLreelaklqaelakLkssaesaq +ake q + e + ++a +++ + L eel+ + e a+L+ ++++ mFLJ00238 437 --LAKELQLK-EEARASLAHLVKDVVPLQEELSGKKQESAQLRRQLQESL 483 saLsenErsWse...qkamLeqElslaeeriedLesQNkLLHdQiesLSs ++Ls E+ +e ++q+++ ++E+ l+e+ +L+ Q +++L mFLJ00238 484 AHLSSVEEELAEarqQEKQHREEKQLLEQEATSLTWQ-------LQLL-- 524 kisvlqqessqedstaldkslnnedslilsrlladEEaknneqlrelisy +++l+ ++ ++l e + mFLJ00238 525 -----------------ETQLGQV-------------SQLVSDLEEQKKQ 544 LRrEkdiletKldvakr..EnarLrQqvellqkeldeLrgsLtaeRaevq L E+d l ++ ++++ E + Q e+ +k + Lr ++ mFLJ00238 545 LMQERDHLSQRVGTLEQlaEVHGPPQSAEMPEKRQQCLREEQV------N 588 asavtiqehkeimkklnqlNlLrESNmiL<-* +s+v+ +e++e++k+l+ + + N L mFLJ00238 589 NSTVSEAEQEELQKELQNM---VDRNQLL 614 Myosin_tail_1: domain 1 of 1, from 229 to 1050: score -532.7, E = 0.68 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR + ++ +l l e s+ ++lE qL+ k+l+ R mFLJ00238 229 MASS--LDLNCSLNNEALE-SFDEMRLEL-----DQLEVREKQLQER 267 IeELeEeLEaE.RaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEl ++ +L+ E++a+R + +q +L++E E e++ G + El mFLJ00238 268 VQ----QLDREnQALRMLVSRQGGQLQVEKEMGYLAVEDSIGLVSLVAEL 313 nkKREaELaKLRrdLEEanlqhEealatLRKKHqdainEl...sdQieqL k + a++++ lq+ + +L + E+++++ Q+e+ mFLJ00238 314 QKQGDVSQATVKK------LQSCLQALEL----NVDKKEYspsALQLENM 353 qKqKakaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElq K ++ +++l +E+ +l+a l+ + EK+ E + mFLJ00238 354 AKE---LDTVRGSLGREN-QLLASLSERLARAEKGEKTPPDTELHQEPVP 399 vKldElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqles + +l ++l + + L EN + + + + ++ ql k +ql mFLJ00238 400 A---DLVLKFQELKGKLQALEGENTEAQELNRQQSIKLEQLAKE-LQLK- 444 QLEeAkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRq EeA+ sl ++ Lq +l + ++lr ql E + + +e + mFLJ00238 445 --EEARASLAHLVKDVVPLQEELSGKKQESAQLRRQLQESLAHLSSVEEE 492 LsKanaeiqqwrsK...fEsEgalraEElEElKkKlnqkisElEeaaEaa L++a + q r ++ +E E+ l+ ++ lE ++ + mFLJ00238 493 LAEARQQEKQHREEkqlLEQEATS-----------LTWQLQLLETQLGQV 531 naKcssLEKtKsRLqsElEDlqievEranaaa........seL.EKKqkn + +s LE K+ L +E + l v + + a+ +++++++e++EK+q mFLJ00238 532 SQLVSDLEEQKKQLMQERDHLSQRVGTLEQLAevhgppqsAEMpEKRQ-- 579 FDKilaEwK.kkvdelqaEletAqreaRn.......lstElfrlKneleE + l E++ +++ + aE e +q+e+ n ++++ l+++l+ l + mFLJ00238 580 --QCLREEQvNNSTVSEAEQEELQKELQNmvdrnqlLEGKLQALQTDYKA 627 lkDqvEaLrRENKnLqdE...ikDLtdqLgEgGRnvHELEKarRrLEaEk l+ + +a +L E+ +i+ L +q +E+ + + k mFLJ00238 628 LQQREAAIQGSLASLEAEqasIRHLGNQ----------MEASLLAVKKAK 667 dELqaALeEAEaALeqeEsKvlRaqvElsqiRsEiERRLaEKEEEfEntR + +a+ E EaAL++ Es +R+q E q R ++E + + E+ ++ mFLJ00238 668 ETMKAQVAEKEAALQSKESECQRLQEEADQCRLQAEAQAQ----ELRALE 713 KnhqraiesLqasLaEaEaKgKaEalRlKKKLEgdInELEiaLDhaNkan + q++i +L + L aE Kg + ++ + + + +a mFLJ00238 714 NQCQQQI-QLIEVL-SAE-KGQQGLS---------LPQVNTDQLALSQAQ 751 aea.qKnvKkyqqqvkeLQtqvEeeQRaredareqlavaERRataLqaEl e +q ++ ++q v +LQ+ + + r+ ++ ql vaE ++ + + mFLJ00238 752 LEIhQGEAQRLQNEVVDLQAKLQVALGDRDKLQSQLGVAETVLREHKTLV 801 EELrvaLeqaeRaRKqAEtElaEaservneLtaqnssLiaqKRKLEgela +L+++ e+++Ra q El ser L+ + aqK E+el mFLJ00238 802 QQLKEQNEALNRAHVQ---ELLQCSEREGILQEESIYK-AQKQ--EQELR 845 alqsDL.......DEavnElkaAeERakKAqaDaarLaeELrqEQehsqk alq++L++ + +++ a+ E ++ +A++D a L ++ + mFLJ00238 846 ALQAELsqvrcssEGAHLEHAELQDQLHRANTDTAELGIQV-----CALT 890 lErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIqKLEaRVReLEaE... +E++R +E+++ L + L++++ aAl + +k LE V L++E+++ mFLJ00238 891 AEKDR--MEEALASLAQELQDSKEAALQE-RKG---LELQVMQLQQEkek 934 LdgEqRRhaet.......qKnlRKaeRrvKELq..fQvEEDkKnlerlQD L + + + e+ ++ ++ q++l+ ae Lq++ +E D + + mFLJ00238 935 LQEKVKAAEEAassfsglQAQLAQAEQLAQSLQetAHQEQDALKFQLSAE 984 LvDKLqaKiKt.......yKRQlEEaEEiaqinlsKyRkaQreLE....d +D q+++Kt +++ ++++ QlEE+ + q + + a +eLE ++ + mFLJ00238 985 IMDH-QNRLKTaneecghLRAQLEEQGQQLQMT----KEAVQELEitkaA 1029 AEERADqAEsslnklRqreaKsRr<-* +EE +s l a+ r mFLJ00238 1030 MEEKLNCTSSHLAECQ---ATLLR 1050 DUF164: domain 1 of 1, from 959 to 1180: score -76.1, E = 0.62 *->mknelksLvki..qeidkekerLeerikeipkeLkkakellealkke + ++sL + +qe d+ k+ L +i +++ Lk a e+ l+ + mFLJ00238 959 AEQLAQSLQETahQEQDALKFQLSAEIMDHQNRLKTANEECGHLRAQ 1005 veeleqekeelkeevkklekeiqeieekikkaEekmdeiktqrEYkALer +ee q ke v le + eek++ + ++e L+r mFLJ00238 1006 LEEQGQQLQMTKEAVQELEITKAAMEEKLNCTSSHLAECQ-----ATLLR 1050 ElqkakdkevtlrkeieqleeelkkieeeieelkeeilkqEkeleeeeee +++ l +e+ + el+k + +i e ++ +++ e + ++ mFLJ00238 1051 ----KDEESTMLQTSLERTQKELEKATSKIQEYYNKLCQEVTNRERNDQK 1096 velEvrkikekvlellskreelkektde.....dllsfYERiiknkknlv + + +++ + l++ el ++ d +++d l f + + k l+ mFLJ00238 1097 MLADLDDLNRTKKYLEERLIELLRDKDAlwqksDALEFQQKLSAEEKCLG 1146 iVPiennvCaGChiiLpsqfenkVrkePddivfCPyCSRILYyee<-* e n C C +f+ Vr+ C C+RI y mFLJ00238 1147 --DMEVNHCHDC----KREFSWIVRRH-----HCRICGRIFCYYC 1180 FYVE: domain 1 of 1, from 1142 to 1206: score 51.7, E = 1.6e-11 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++ + D ev++C+ C+++F+ ++RrHHCR CGrifC C+++ v mFLJ00238 1142 EKCLGDMEVNHCHDCKREFS-WIVRRHHCRICGRIFCYYCCNNYVVT 1187 pylgiaallkndviekpvRVCdsCydrlnk<-* ++ g k+ R C C++ + mFLJ00238 1188 KPSG-----------KKERCCRACFQKFGE 1206 EMP24_GP25L: domain 1 of 1, from 1356 to 1440: score 84.5, E = 2.2e-21 *->eeggstlsWefrtgdldidfgiyfsktecvsedeevhtspdgpvihs e+g+t+sW+f+++ ++i+f + f+ te++++d+ p ++ mFLJ00238 1356 AEPGLTISWVFSSDPKSISFSVVFQETEDTPLDQ---CKVLIPTTRC 1399 eskkssgevidfsFtapepGeYklCFdNsyStftsKtvrfielev<-* +s+k++ ++++++ pG+Y+l FdN++S+f sK+v + +l+v mFLJ00238 1400 NSHKENI---RGQLKVRIPGIYLLIFDNTFSRFISKKVLY-HLTV 1440 //