hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msp/msp01062/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00237  ( 643 res)   msp01062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
OLF      Olfactomedin-like domains                      243.7    1.5e-68   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
OLF        1/1     388   643 .]     1   349 []   243.7  1.5e-68

Alignments of top-scoring domains:
OLF: domain 1 of 1, from 388 to 643: score 243.7, E = 1.5e-68
                   *->giLagVskPvllkesekiagksGaWmkDplpnstkTkkrvWvmDgva
                      g L +V  Pv +   +      GaWmkDp++      +r++v+  + 
   mFLJ00237   388    GTLRAVDPPVKHHSYG---RHEGAWMKDPAALD----DRIYVTNYY- 426  

                   DGrvlrvvrEYssmsdfldgknkikykLphLiKNKLNNTFalsGTGvVVY
                     +++ ++ E      f +g+ +  ykLp+           + GTG VVY
   mFLJ00237   427 --YGN-SLVEFRNLENFKQGRWSNMYKLPY----------NWIGTGHVVY 463  

                   nGsLYFnkfeSrsivRyeLeTgvvkkeellpeAgYndrfpYPDHTFEECN
                    G+ Y+n + +++i++y+L+ + v   +llp   Y d+ p          
   mFLJ00237   464 QGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPW--------- 504  

                   ATDRHVWLawgghsDiDLaVDEnGLWvIYAT.....EqnaGkIVisKlnP
                            w+ghsDiD+aVDE+GLWvIY   ++++E   + IV+s+l+P
   mFLJ00237   505 --------KWRGHSDIDFAVDESGLWVIYPAvdehdETQHEVIVLSRLDP 546  

                   asLev..entWnTeynKrsaanAFiICGvLYvvkSvYEDDDaeslgtkit
                   a L v++e tW T  +  s +n F +CG+LY+v        ++    ++ 
   mFLJ00237   547 ADLSVhrETTWKTRLRRNSYGNCFLVCGILYTVDT------YNQHEGQVA 590  

                   YaYdTntPVFSFLSFViNFLGqFLLGYPVFLTEqSLKVEKRqKTEKSRiL
                   Ya+dT t                                           
   mFLJ00237   591 YAFDTHT------------------------------------------- 597  

                   RSRENSTLiRPPigkeklldipfeNkYqyismLdYNPlDrkLYawdNghl
                                g++ + + pf N Y+y + +dYNP++r LYawdNgh+
   mFLJ00237   598 -------------GTDAHPQLPFLNEYSYTTQVDYNPKERVLYAWDNGHQ 634  

                   lkYdvkLee<-*
                   l+Y + +     
   mFLJ00237   635 LTYTLHFVV    643  

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