hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msp/msp01062/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00237  ( 643 res)   msp01062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
OLF      Olfactomedin-like domain                       259.2    5.7e-74   1
Mucin    Mucin-like glycoprotein                        -12.9       0.45   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Mucin      1/1     162   428 ..     1   151 []   -12.9     0.45
OLF        1/1     388   643 .]     1   294 []   259.2  5.7e-74

Alignments of top-scoring domains:
Mucin: domain 1 of 1, from 162 to 428: score -12.9, E = 0.45
                   *->MmtlrRlLcAl.LvLaLCCCasVCvtAqe..................
                      Mm + + L  l+L L     a+V +tA  ++++++ +++ ++++++ 
   mFLJ00237   162    MMSIKKELSSLgLQLLQRDAAAVPATAPAsspdskaqdtaggqgrdl 208  

                   ..................................................
                   ++ ++ +++ ++++  ++++++  + ++ ++++ +++ ++++ +++   +
   mFLJ00237   209 nkygsiqksfsdkglakppkekllnveklrkesikgripqptarpralaq 258  

                   ..................................................
                   ++   ++ +  + ++++ +++ ++   +++ ++++  ++ +++ + + ++
   mFLJ00237   259 qqavirgftyykagrqearqeapkaaadntlkgtswleklppkieaklpe 308  

                   .....eGqydaavveaaeGqsktttttttttpttttttttweketTttta
                   +++ +      +  e+++  +  ttttt t + ttttt t     T tt 
   mFLJ00237   309 pnsakHDDVRLQASEGGNLTPDITTTTTSTSSSTTTTTST-----TSTTS 353  

                   itttttktttttttttttTttteAPsknittseAPtttdtraPSsirkiD
                   +t ttt ++ tt  +t     +e Ps+    s   t      P   ++  
   mFLJ00237   354 TTSTTTPSPITTPWPTEPPLHPEVPSQGREDSCEGTLRAVD-PPVKHHSY 402  

                   GSLgssaWVcvPLLLlvsAlvyTAGaag<-*
                   G   + aW   P  L     v      g   
   mFLJ00237   403 GRHEG-AWMKDPAALDDRIYVTN-YYYG    428  

OLF: domain 1 of 1, from 388 to 643: score 259.2, E = 5.7e-74
                   *->giLagVskPvllkeseKgiagksGaWmkDplpnstkTkkrvWvmDgv
                      g L +V  Pv +   +       GaWmkDp++      +r++v+  +
   mFLJ00237   388    GTLRAVDPPVKHHSYG----RHEGAWMKDPAALD----DRIYVTNYY 426  

                   aDGrvlrvvrEYssmsdfldgknkikykLphLiKNKLNNTFalsGTGvVV
                      +++ ++ E      f +g+ +  ykLp+           + GTG VV
   mFLJ00237   427 ---YGN-SLVEFRNLENFKQGRWSNMYKLPY----------NWIGTGHVV 462  

                   YnGsLYFnkfeSrsivRyeLeTgvvkkeellpeAgYndrfpYPDHTFEEC
                   Y G+ Y+n + +++i++y+L+ + v   +llp   Y d+ p         
   mFLJ00237   463 YQGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPW-------- 504  

                   NATDRHVWLawgghsDiDLaVDEnGLWvIYAT.....EqnaGkIVisKln
                             w+ghsDiD+aVDE+GLWvIY   ++++E   + IV+s+l+
   mFLJ00237   505 ---------KWRGHSDIDFAVDESGLWVIYPAvdehdETQHEVIVLSRLD 545  

                   PasLev..entWnTeynKrsaanAFiICGvLYvvkSvYEDDDaeslgtki
                   Pa L v++e tW T  +  s +n F +CG+LY+v        ++    ++
   mFLJ00237   546 PADLSVhrETTWKTRLRRNSYGNCFLVCGILYTVDT------YNQHEGQV 589  

                   tYaYdTntgkeklldipfeNkYqyismLdYNPlDrkLYawdNghllkYdv
                    Ya+dT tg++ + + pf N Y+y + +dYNP++r LYawdNgh+l+Y +
   mFLJ00237   590 AYAFDTHTGTDAHPQLPFLNEYSYTTQVDYNPKERVLYAWDNGHQLTYTL 639  

                   kLee<-*
                    +     
   mFLJ00237   640 HFVV    643  

//