hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02250/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00236  ( 701 res)   mph02250

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FN3      Fibronectin type 3 domain                       26.8      0.003   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FN3        1/1      44   126 ..     1    69 []    26.8    0.003

Alignments of top-scoring domains:
FN3: domain 1 of 1, from 44 to 126: score 26.8, E = 0.003
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P++P+ +  ++++  ++       sv +sW pP+ +++++ i gY++
   mFLJ00236    44    PSAPPQG--VTLR-SGNG------SVFVSWAPPpaeshngvIRGYQv 81   

                   ................ytltgLkPgaepwteYefrVrAvngndaGeg<-*
                   ++ ++ + +  +++++   t L+  ++++  Y ++V+Av+g  aG g   
   mFLJ00236    82 wslgnaslpaanwtvvGEQTQLEIATRLPGSYCVQVAAVTG--AGAG    126  

//