hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02250/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00236  ( 701 res)   mph02250

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                     35.1    1.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
fn3        1/1      44   129 ..     1    84 []    35.1  1.6e-06

Alignments of top-scoring domains:
fn3: domain 1 of 1, from 44 to 129: score 35.1, E = 1.6e-06
                   *->PsaP.tnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng
                      PsaP++++t ++ ++ s+ +sW pp+ +++ng+i gY+v + +  n 
   mFLJ00236    44    PSAPpQGVTLRS-GNGSVFVSWAPPPaesHNGVIRGYQV-W-SLGNA 87   

                   ge..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                     +  n+  v  +t + ++    Pg+ Y v+V+Av+g+G G+ S   
   mFLJ00236    88 SLpaANWTVVGEQT-QLEIATRLPGS-YCVQVAAVTGAGaGELS    129  

//