hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msp/msp01081/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00234  ( 471 res)   msp01081

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MFS_1    Major Facilitator Superfamily                   98.5    1.3e-25   1
Sugar_tr Sugar (and other) transporter                 -150.5       0.27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MFS_1      1/1      41   427 ..     1   396 []    98.5  1.3e-25
Sugar_tr   1/1      40   468 ..     1   488 []  -150.5     0.27

Alignments of top-scoring domains:
MFS_1: domain 1 of 1, from 41 to 427: score 98.5, E = 1.3e-25
                   *->lflatflaglgrsllgpalp.ylas................sl....
                      +fla+f+  l   l++ +l + ++++ + ++++++++ +++s ++  
   mFLJ00234    41    VFLANFALVLQGPLTTQYLWhRFSTelgyngtrhrencgnqSAdplm 87   

                   eesslg..qtd.tlspteiglllsafslgyalaqplaGrlsDrfGrrvyi
                   +e    + +++ tl   + g+l+++f       + l+G++sDr+Grr   
   mFLJ00234    88 KE--VEtlTSHwTLYMNVGGFLVGLFW------STLLGAWSDRVGRR--- 126  

                   rlkpvlllglllfalgslllafassts..lwlllilrallqGlggg..ll
                   +   +l+l+ l+++l +++++f+ +   ++ +++++ral  +l g  ++l
   mFLJ00234   127 P---LLVLASLGLLLQAVVSIFVVQLElhVGFFVLGRAL-CALLGDfnGL 172  

                   apaaaaliadwfppeergralgivsagfglGaalggpllggllaalgwwg
                   ++a+ a +ad+++ + r++ ++++ a++g+++ l+++l+g +l a g+  
   mFLJ00234   173 LAASFASVADVSSNHSRTFRMALLEACIGVAGTLASLLGGHWLRAQGY-- 220  

                   ssgtfWraaFlilgilallaallllvlfllpeppakksakpeeeeali..
                           +F+++ +l +++al+  + f + e+ +++++++ +++++ ++
   mFLJ00234   221 ------ANPFWLALALLIVMALY--AAFCFGETVKEPKSTRLFTLRHHrs 262  

                   .......plr.lll.p.lllillalflllaaflalltflplylllpllls
                     +    p+++  + +  l +l++++++ + f+a  ++  + l  pl ++
   mFLJ00234   263 iarlyvvPAPeKSRmHlALYSLAIFVVVTVHFGAQDILTLYELSAPLCWD 312  

                   .saglslsalaagllllalglggllgglllggrlsdrlgrglarkgeaea
                   +++ +  s         a+  +  l +ll+++ l   l            
   mFLJ00234   313 sKLIGYGS---------AAQHLPYLTSLLGLRLLQFCLA----------- 342  

                   errrllllgllllalgllllafapslsalllvallllGlgfggvfpalna
                      +++ +gl++ +lg++++afa+ ++ l++ ++ ll l+   + p + a
   mFLJ00234   343 -DTWVAEIGLAFNILGMVVFAFATITP-LMFTGYGLLFLSLVTT-PVIRA 389  

                   lasdlappeaqerGtasGlyntagslggalgpllgGllld<-*
                    +s+l+ +   e+G+ +++++ ++sl++++++ ++  ++    
   mFLJ00234   390 KLSKLVSES--EQGALFSAVACVNSLAMLMASGIFNSIYP    427  

Sugar_tr: domain 1 of 1, from 40 to 468: score -150.5, E = 0.27
                   *->valvaalgGgflfGYDtgvigafltliaflkrfglltssgaleel..
                      +++ a ++  +l+G          t++  +++ + l ++g+  + + 
   mFLJ00234    40    LVFLANFAL-VLQG-------PLTTQYLWHRFSTELGYNGTRHREnc 78   

                   ...........vgystvltglvvsi.ffvGcliGslfaGwlgdrfGRkks
                   ++++ ++  ++v+++t+ ++l   ++ f+ +l+ s ++G+++dr GR++ 
   mFLJ00234    79 gnqsadplmkeVETLTSHWTLYMNVgGFLVGLFWSTLLGAWSDRVGRRPL 128  

                   llialvlfviGallmaaapgktTiGgwavyllivGRvlvGlgvGgisvlv
                   l +a++     a+++++    +     +v+ + +GR l+ l +G  ++l 
   mFLJ00234   129 LVLASLGLLLQAVVSIFVVQLE----LHVGFFVLGRALCAL-LGDFNGLL 173  

                   PmYisEiA...PkklRGalgslyqlgi.tiGilvAaiiglglnktnndaa
                   +   + +A+ +  + R +  +l   +i+++G l    + lg ++  +   
   mFLJ00234   174 AASFASVAdvsSNHSRTFRMALLEACIgVAGTL---ASLLGGHWLRA--- 217  

                   lnswgWRiplglqavpalllligllflPESPRwLvekgkle.eAravLak
                       g+  p++l++++ ++++++  f+             e+++++ +  
   mFLJ00234   218 ---QGYANPFWLALALLIVMALYAAFCF-------GETVKEpKSTRLFTL 257  

                   lrgvedvdqeiqeekaeleatveeekagkaswleLfrgrtrpkyrqrllm
                   +   + ++ ++++ ++++ +               ++      y  ++++
   mFLJ00234   258 RHHRSIARLYVVPAPEKSRMH--------------LAL-----YSLAIFV 288  

                   gvmlqifqQltGiNaifyYsptifksaGvsdsrasllvtiivgvvNfvfT
                   +v+++++               i+    +s +   l +   + ++  ++ 
   mFLJ00234   289 VVTVHFGA------------QDILTLYELSAP---LCWDSKLIGYGSAAQ 323  

                   lvaliflvdrfGRRpllllGaagmaicflilgasvivallllskskdpss
                        +l   +G R ll +++a + ++ + l+     +++l   +    +
   mFLJ00234   324 HLP--YLTSLLGLR-LLQFCLADTWVAEIGLA-----FNILGMVV----F 361  

                   kgagivaivfillfiafFalgwGpvpwvivsElFPlgvRskamalataan
                     a i  ++f+   + f +l  +pv  + +s l + +  ++ ++  +++n
   mFLJ00234   362 AFATITPLMFTGYGLLFLSLVTTPVIRAKLSKLVSESEQGALFSAVACVN 411  

                   w....lanfiigflfpyitgaiglflggyvflvfagllvlfilfvfffvP
                         a+ i++ ++p  ++ ++    g+ fl+ a   +lfi  ++++v 
   mFLJ00234   412 SlamlMASGIFNSIYPATLNFMK----GFPFLLGA--GLLFIPAILIGVL 455  

                   ETkGrtLeeieelf<-*
                   E ++ ++ e ++     
   mFLJ00234   456 EKVN-PHPEFQQFP    468  

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