hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf01051/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00229  ( 624 res)   mpf01051

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1630  Protein of unknown function (DUF1630)         1529.1          0   1
DENN     DENN (AEX-3) domain                            -71.5      0.065   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DENN       1/1     184   372 ..     1   231 []   -71.5    0.065
DUF1630    1/1      38   620 ..     1   668 []  1529.1        0

Alignments of top-scoring domains:
DENN: domain 1 of 1, from 184 to 372: score -71.5, E = 0.065
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      + +ks++liS+lp+   F+ vL+++   +   +++            
   mFLJ00229   184    YFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPY----------- 219  

                   srdtvwrvltgvlevLhdirElEslirnLlyeVplPapGktirvkvvvls
                                        lE+    + +  p P+pGkt+++ + +l 
   mFLJ00229   220 ---------------------LEAACNDVDRW-PAPVPGKTLHLPIMGLV 247  

                   sgv.............kHyrplelilfplpdplplpled.fdlaelF..e
                   + v+ ++ ++++++++    ++ ++  ++++  +lp ++++dl   F ++
   mFLJ00229   248 MKVriptchdkpgttqM---VQLTQQADTHTSIILPTVHeVDLFRCFcpV 294  

                   aLGvenvlqLfaaaLlErkiLflSsklsrLsscchAlvaLLYPleWqh..
                    L  ++   L++++Ll    ++ + ++s  s  + Alv+ + Pl++ ++ 
   mFLJ00229   295 FLHSQM---LWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSdf 341  

                   .pyIPvLPasLlsAEdvLcAPtPFlIGVhssffelvkdlpleidvvvVDL
                   +py ++     +                +s+f+e+      + + v++ +
   mFLJ00229   342 rPYFTI-----H----------------DSEFKEYTTRTQAP-PSVILGV 369  

                   Dtn<-*
                    +    
   mFLJ00229   370 TNP    372  

DUF1630: domain 1 of 1, from 38 to 620: score 1529.1, E = 0
                   *->ElsiegdeaaavaAansasedsasDdGrrGLLrWdrFsaWLHCvCVV
                      E+++eg+eaaa+aAa++a+ed+++DdGrrGLLrWd+FsaWLHCvCVV
   mFLJ00229    38    EAGAEGREAAALAAAGVALEDEEEDDGRRGLLRWDGFSAWLHCVCVV 84   

                   tFDLELGQALEvvYPpDfkLsdkEkinICYlSFPDSVSqHHNSGclgDTq
                   +FDLELGQA+Ev+YP+++kL+dkEk+nICYlSFPDS     NSGclgDTq
   mFLJ00229    85 GFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDS-----NSGCLGDTQ 129  

                   FhFRlRrskgrrsswhadldsynkdaPvaLqrDgaERylYGYVYFRQvkD
                   F+FR+R+s+grr+s+h++ld+++kd+Pv+L++D+a  y+YGYVYFRQv+D
   mFLJ00229   130 FCFRFRQSSGRRVSLHCLLDEFDKDLPVYLKKDPA--YFYGYVYFRQVRD 177  

                   atlkRGYFQKSlVliSrLPffsLFyslLqqIAPeYFEkgepaLEaacneI
                   +tlkRGYFQKSlVliS+LP++++F+++L+qIAPeYFEk+ep+LEaacn++
   mFLJ00229   178 KTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDV 227  

                   dRqWPaPvpGktLeLPilgvvlqvriPrahSLPlergslvDkPYEfsass
                   d +WPaPvpGktL+LPi+g+v++vriP          +++Dk    ++++
   mFLJ00229   228 D-RWPAPVPGKTLHLPIMGLVMKVRIP----------TCHDK----PGTT 262  

                   pvellpteallPaplVLaSvhelDLFrcfrpvllhlqtLWELvLlGEPll
                   ++++l+++a+++++++L++vhe+DLFrcf+pv+lh+q+LWELvLlGEPl+
   mFLJ00229   263 QMVQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLV 312  

                   ivAPSPsvsSemVlaLVsliaPLrycvDFRPYFTIHDSEFkEytselrrt
                   ++APSPs+sSe+VlaLV++i+PL+y++DFRPYFTIHDSEFkEyt+   rt
   mFLJ00229   313 VMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTT---RT 359  

                   qapPnvILGVTNPFFiKaLqhWPHilrvGepakNsnrvaflsrsqkHARn
                   qapP+vILGVTNPFF+K+LqhWPHi+r+G+                    
   mFLJ00229   360 QAPPSVILGVTNPFFAKTLQHWPHIIRIGD-------------------- 389  

                   iAgklSlkpsGdlpkqvkLKklsnlktLdtvklrrdgalCLmTEHkaGlY
                         lkp+G++pkqvk+Kkl+nlktLd+               k+G+Y
   mFLJ00229   390 ------LKPAGEIPKQVKVKKLKNLKTLDS---------------KPGVY 418  

                   TaYkpyLkkDksLiKrLLkGiqskRpeESmSVVQsaILRRHfLELTqSFi
                   T+YkpyL++D+++iK+L+kGiq+kRp+E    +Qs+ILRR+fLELTqSFi
   mFLJ00229   419 TSYKPYLNRDEEIIKQLQKGIQQKRPSE----AQSVILRRYFLELTQSFI 464  

                   iPLErYlaSLMPlqKsiSPfKtpPqlrsFsqDdFLkTLEGrkaGPqLTsg
                   iPLErY+aSLMPlqKsiSP+K+pPqlr+F +++F+kTLE  k+GPqLTsg
   mFLJ00229   465 IPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLE--KTGPQLTSG 512  

                   lKGDWkGLYRRFlkSPNFdGWyraRhremeqkLeaLhleAlceaDlCeqw
                   +KGDW+GLYR+FlkSPNFdGW+++R++em+qkLeaLhleAlce+Dl ++w
   mFLJ00229   513 IKGDWIGLYRQFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDL-LLW 561  

                   tkdksEVEiVDlvLkLrekLseYGDevksleagggsLPvkedSEGtlqkL
                   +++++EVE+VDlvLkL++kL         l+ag++sLPvk+d   t++kL
   mFLJ00229   562 IQKHTEVETVDLVLKLKNKL---------LQAGRESLPVKPD---TVEKL 599  

                   rkqieaiissLPdDLqqvLll<-*
                   r++i+aii++LPdDLq++Ll+   
   mFLJ00229   600 RTHIDAIILALPDDLQGILLK    620  

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