hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic33052/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00228  ( 494 res)   mic33052

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Glyco_hydro_65m Glycosyl hydrolase family 65 central   -156.2     0.0024   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_65m   1/1     272   487 ..     1   440 []  -156.2   0.0024

Alignments of top-scoring domains:
Glyco_hydro_65m: domain 1 of 1, from 272 to 487: score -156.2, E = 0.0024
                   *->RfaLFHLlqtlpg..ndarlnvsigakGLtGeg.....YrGhvFWDT
                      R +L++L++ lp++++  + ++++++ GL + g++++ Y Gh+FWD 
   mFLJ00228   272    RGSLYYLFSELPQpgTQGFISYGLSPGGL-SNGskeecYWGHIFWD- 316  

                   EifvlPvllAltaPevARnLLlYRyrtLeaAkenAkklGlkGAlYPWeSg
                                                                     
   mFLJ00228     - -------------------------------------------------- -    

                   rdGeEctqelhLNirtgvewepdasveeeiHvngDIAyAvwqYyqvTGDe
                        ++                ++                         
   mFLJ00228   317 ----QVH----------------PT------------------------- 321  

                   eflretGlevlvetArFWasrvefddskgryhIhgVtGPDEYheaYPGee
                                    W+ r+ +  +              +        
   mFLJ00228   322 ---------------LHWLHRGSCMQR--------------FR------- 335  

                   nnvnnNaYTNlmAkwnLeyAlealrelgeeerRkllaekLevdeeelekW
                                    ++A+ ++++lg++                +++W
   mFLJ00228   336 --------------ALPHFAAALAKDLGLP---------------IRKQW 356  

                   eeiYsknmyiPrdeelgVfeqydgyldlaevdvaaYralygditrlPlll
                    e+ ++++ iP+d+e + ++++dgy +                       
   mFLJ00228   357 LEV-ADRIKIPFDSEQNFHPEFDGYER----------------------- 382  

                   eaegdsvlrsqiiKQADvvllmYpLgseeltLlkrlkdafseesilrNiD
                               +KQADvvll+Yp            + +++++  + N  
   mFLJ00228   383 ---------GEEVKQADVVLLGYP-----------VPFPLTPDIRRKN-- 410  

                   ldYYeprTvhdSPsLSasvhAivAarlgkldkAyeyflqrsarPYvRaPF
                   l+ Ye++T++ +P++++ ++  ++ +l   + +++     s++       
   mFLJ00228   411 LETYEAVTSPQGPAMTW-TFDPLCPDLVS-RVSVSGI---SYL------- 448  

                   kqfSEqriDladnqngtTadGi..HltsmgGtwqaivfGFgGlF.rlrid
                           ++ ++++  + d ++   t+ ++ w  ++   + l+++l   
   mFLJ00228   449 --------GN-KINFAFSKDSVtlEVTARAEPWAPLLE--AELWpSLA-- 485  

                   dqL<-*
                     L   
   mFLJ00228   486 -HL    487  

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