hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk02576/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00227  ( 590 res)   mtk02576

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     107.5    1.5e-27   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     310   411 ..     1    92 []    72.8  4.4e-17
C2         2/2     451   554 ..     1    92 []    34.7  1.2e-05

Alignments of top-scoring domains:
C2: domain 1 of 2, from 310 to 411: score 72.8, E = 4.4e-17
                   *->tLtvkiisArnLp.......DPYVkvs.........kTkvvkktlsg
                       L+v +i++++L   +++++DPYVk +  +++++++kT+v+k++l  
   mFLJ00227   310    ELRVQVIQCQGLAaarrrrsDPYVKSYllpdkqskrKTSVKKRNL-- 354  

                   fNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvtippn
                    NP++nE   t+  +v+  + +++ L ++V+++++ +++ f+G+v++p  
   mFLJ00227   355 -NPIFNE---TLRHSVQQadlpgRvLSLSVWHReslgrnIFLGEVEVP-- 398  

                   nahqhsadglihlsell.ggrh.kl<-*
                               l++     + ++l   
   mFLJ00227   399 ------------LDTWNwDSEAtWL    411  

C2: domain 2 of 2, from 451 to 554: score 34.7, E = 1.2e-05
                   *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl
                       L+ ++++A+ L + ++++ D Y+  s  +++++ ++++T+vv+++l
   mFLJ00227   451    ELHFWVKEAQSLVplrpgslDTYIQCSvlpddsrasrqRTRVVRRSL 497  

                   sgfNPvWnEesetFeFevpp......s.LeieVyDk.....dfiGrvtip
                      +Pv+n+   t++++   + + +++  e++++D++   ++ +G ++++
   mFLJ00227   498 ---SPVFNH---TMVYDGFGpadlrqAcAELSLWDHgalasRQLGGTRLS 541  

                   pnnahqhsadglihlsell.ggrh.kl<-*
                                 l +  + g + ++   
   mFLJ00227   542 --------------LGTGSsYGLQvPW    554  

//