hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk02576/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00227  ( 590 res)   mtk02576

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                      166.8    3.7e-46   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     311   396 ..     1    88 []   100.9  2.6e-26
C2         2/2     452   539 ..     1    88 []    65.9  8.5e-16

Alignments of top-scoring domains:
C2: domain 1 of 2, from 311 to 396: score 100.9, E = 2.6e-26
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl
                      LrV vi++++L++     + sDPYVk +l++dk+ +k+kT+v+k++l
   mFLJ00227   311    LRVQVIQCQGLAAAR--RRRSDPYVKSYLLPDKQ-SKRKTSVKKRNL 354  

                   NPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   NP++NEt+  +v  +dl  ++L ++V+++ ++gr+ flGev+   
   mFLJ00227   355 NPIFNETLRHSVQQADLPGrVLSLSVWHRESLGRNIFLGEVE    396  

C2: domain 2 of 2, from 452 to 539: score 65.9, E = 8.5e-16
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      L+ +v+eA+ L p     g+ D+Y  +s+++d+++ ++++T+v++++
   mFLJ00227   452    LHFWVKEAQSLVPLR--PGSLDTYIQCSVLPDDSRaSRQRTRVVRRS 496  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   l+Pv+N t++++++ p+dl + + e++++D++ +   + lG ++   
   mFLJ00227   497 LSPVFNHTMVYDgFGPADLRQaCAELSLWDHGALA-SRQLGGTR    539  

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