hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04436/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00220  ( 214 res)   mbh04436

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWC      von Willebrand factor (vWF) type C domain       35.7    6.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWC        1/1     118   204 ..     1    75 []    35.7  6.1e-06

Alignments of top-scoring domains:
VWC: domain 1 of 1, from 118 to 204: score 35.7, E = 6.1e-06
                   *->CvhpnGevyrdgetWkpdk..pCqiCtCldge...............
                      C++  G++ + g +W p+ ++ C  C C+ g  ++++  ++++ +++
   mFLJ00220   118    CFF-EGQQRPHGARWAPNYdpLCSLCICQVGClgkgqlatgsgargp 163  

                   .............kvlCdkveCppppslpckdsdCpnperlpavaekppG
                   ++ ++ ++  ++++v Cd+v Cppp        +Cp+p       ++  +
   mFLJ00220   164 thlqslgpflqrrTVICDPVVCPPP--------SCPHP-------VQALD 198  

                   eCCpeyrC<-*
                   +CCp  +C   
   mFLJ00220   199 QCCP--VC    204  

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