hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msk/msk07072/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00216  ( 418 res)   msk07072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UDPGP    UTP--glucose-1-phosphate uridylyltransferase   170.4    2.9e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UDPGP      1/1      35   418 .]     1   480 []   170.4  2.9e-47

Alignments of top-scoring domains:
UDPGP: domain 1 of 1, from 35 to 418: score 170.4, E = 2.9e-47
                   *->EldgFfeLyrRYlleitgkgqsiewdkIkaPnedevvEVLGSAdY.d
                      E+d+ +e  +R   +  g  +        a+  + + E  GSA + d
   mFLJ00216    35    EADALREHCQRAAAA--GALAPGPLPDLAARLQPLPPERVGSAIRcD 79   

                   qlklqaledednasslLnKLAVLKLNGGlGTsmGckgPKSviEVrLPngn
                   q     +e e+  +++LnK+AVL+L+GG+GT++G+++PK+++ V+LP+ +
   mFLJ00216    80 QETRLRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYQVGLPSQK 129  

                   TFLDLiVrQIeKLQQVAEKqLNkrYgnvdIVPLlLMNSfnTdeeTkkile
                   T+ +L++++I + QQ A+     r g+ + VP+++M+S  T   T k+++
   mFLJ00216   130 TLYQLQAERIRRVQQLADQ----RQGTHCTVPWYIMTSEFTLGPTIKFFK 175  

                   KHKyYslskvrikTFqQSryPrivkDsllPvpkknqndsepkeeWYPPGh
                   +H ++ l   ++  F+Q ++P++ ++++ +++ k   +    ++++P+G+
   mFLJ00216   176 EHDFFHLDPTNVVLFEQRMLPAVTFEGKAILERKD--K----VAMAPDGN 219  

                   GDlFrSLynSGllDtLLaqGKEyiFVSNvDNILGAtvDLnILnhiInPPn
                   G+l+ +L+   +l+++ ++G E ++V++vDNIL+  +D+ ++++++    
   mFLJ00216   220 GGLYCALADHQILEDMKQRGVEFVHVYCVDNILVRLADPVFIGFCVL--- 266  

                   GkkiEYgmEVTdKTraDvkgGtLisYdGklrLLEyaQVpkehvdeFKSis
                    +++++g++V++K  + +++G+++++dG+ +++Ey+++++e +     ++
   mFLJ00216   267 -QGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYSEISPEIAGQLGADG 315  

                   kFkifNTNNiWvnLkaVKrLieVVNsneLnLdIivNqkkitykdegiQLI
                     ++ N++Ni +++++  +L                   +    +     
   mFLJ00216   316 G-LLYNAGNICNHFFTRGFLDV-----------------V----TRE--- 340  

                   KPDKPnviQLETavGaaIqfFknsvginVpRsREFlPvKttSSQNGKDNP
                                               V R+ EF+P+K+ +    +DNP
   mFLJ00216   341 ----------------------------VCREEEFSPLKNDD-TADRDNP 361  

                   TTARDLLLvqSdLYnLdahGslklnpSsRlgptvPlikLGGkEFkkvadf
                    T R +LL+q+  + L  +G       +R+  +v  + L        ++ 
   mFLJ00216   362 STCRRALLAQHYRWALQ-AG-------ARF-LDVHGVQLT-----EQSGM 397  

                   laRlkDANsIPdilELdhLtVsGdVyFGsnVtLK<-*
                   l + +   + P i+E+++L ++ ++            
   mFLJ00216   398 LPN-G---DPPAICEISPLVSYSGE---------    418  

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