hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg20018/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00211  ( 305 res)   mbg20018

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MAGE     MAGE family                                    105.0    1.4e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MAGE       1/1       1   208 [.     1   254 []   105.0  1.4e-27

Alignments of top-scoring domains:
MAGE: domain 1 of 1, from 1 to 208: score 105.0, E = 1.4e-27
                   *->rgQkSklckrEerlqargEtqglvgaQapaaeeqqeeasssspsqrP
                       g +S               +g v       ++      ++sp    
   mFLJ00211     1    SGARS---------------LGGVFWRLLLPIA------ACSP---- 22   

                   vSsffSytlaLvlgtleevpaAggspspPqsPQgs.....asstitavaa
                                g+  ++p + g ps ++ P++  ++ +++ + t+ aa
   mFLJ00211    23 -----------PTGDMLQKPRGRGRPSTQADPERDwggagEEGPSTSRAA 61   

                   ktslsqSdEGssSqvvLqeEEgpstSqaltsteslfkdpLtrKvaeLVqF
                            G+sSq       g++ S + +   +  + +L  KvaeLVqF
   mFLJ00211    62 ---------GGSSQ-------GSRASLSAPTVGPRTQKQLELKVAELVQF 95   

                   LLrKYkmKepvTKAEMLksViknYKdhFPeIFrKASerlelVFGidLKEV
                   LL K+++K p+ + ++Lk V + Y+d  P +++ A erl+ VFG  L E 
   mFLJ00211    96 LLIKDQKKIPIKRTDILKHVVGDYRDVYPNLLKLAAERLQYVFGYKLVEL 145  

                   DPtgHsYvLVtkLgL.sydGlLsdnqsmPktGLLiivLgvIFmkGncApE
                    P +HsY+L+++L + + d     +q+ P +GLL+ivLg+IFmkGn ++E
   mFLJ00211   146 EPKSHSYILINMLEPvEADAEMRGDQGTPISGLLMIVLGLIFMKGNTITE 195  

                   EeIWEfLsvlGvY<-*
                    e+W+fL+ lGvY   
   mFLJ00211   196 TEVWDFLRRLGVY    208  

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