hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msj/msj09154/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00209 ( 813 res) msj09154 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Aldedh Aldehyde dehydrogenase family 232.0 8.6e-66 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Aldedh 1/1 59 499 .. 1 479 [] 232.0 8.6e-66 Alignments of top-scoring domains: Aldedh: domain 1 of 1, from 59 to 499: score 232.0, E = 8.6e-66 *->WvdsssGsetievinPathgeviatvpaataeDvdaAvaAAraAfks W +++ + ++ +P t ge +a++ +a aeD+ aAv+AA+ Afk mFLJ00209 59 WLKPEHR-NPAPCQDPIT-GENLASCLQAEAEDIAAAVEAAKIAFK- 102 GaWaktppaeRariLrkaAdlleeradeLAeletlEtGKplaeArgaevp aW+++p+a R++ L ++A + +++ L le+l tG ++e r +vp mFLJ00209 103 -AWSQLPGAARGQHLTRLAKVVQKHQRLLWTLESLVTGRAVREVRDGDVP 151 raidtlryyAglarkleGetipsdtdapggpgrlaytrRePvGVVgaItP a + l+y A +a+ a+ ++P+GV+g+I P mFLJ00209 152 LAQQLLQYHAVQAHA----------------QGDALADWQPMGVIGLILP 185 WNFPlllaawKiAPALAaGNtVVlKPaElTP...lsalllAelfeeAGlP F +l ++w i+PALA+G+tVV l P+ + lllA+l+ e G mFLJ00209 186 TPFSFLDMMWRICPALAMGCTVVA----LVPpafPTPLLLAQLAGELGSF 231 aGVlNvVtGsGsevGdaLveHPdvdkvsFTGSTavGrrIaeaAalknlKr +G lNvV+G + G L++ P+v kv+F G ++ Gr + ++ a ++ mFLJ00209 232 PGILNVVCG-PASLGPVLASQPGVQKVAFCGAVEEGRVLRRTLA-GRGAE 279 vtLELGGKsPlIVfdDADLdaAvegavfgaFfnaGQvCtAgsRllVhesi + L LG s l +d AD+d Aveg+v ++++ + g Rll++es+ mFLJ00209 280 LGLALGTESLLLLTDSADVDSAVEGVVDAVWS---DRSLGGLRLLIQESV 326 yDeFverlveaakklkvGdPlDpdtdiGPliskkqlekvlsyiedAkeeG +De + rl++++++++ G +lD ++d+G+ +++++ +s++++A ++G mFLJ00209 327 WDEAMRRLQARMAQIRSGRGLDGAVDMGA-RGAAARDLAQSFVDEAQSQG 375 AklltGGerrpeeaglekGyfvePTvladVtpdmriaqEEiFGPVlsvip +++ + G ++ f+ P ++++ +p +++aq E+ PV+ p mFLJ00209 376 GQVFQAG------DVPSSSPFFSPALVSGLPPAAPCAQAEVPWPVVMASP 419 FddeeEAIelANdteYGLaagVfTrDldrAlrvarrleaGtVwiNdyttg F+++ EA++lAN t+ G +a+V+++ l+ Al + l++GtVwiN + + mFLJ00209 420 FRTVKEALALANGTPRGGSASVWSERLGQALELGYGLQVGTVWINAHGLR 469 dpeaaqPFGGfKqSGiGgREgGkegleeYtetKtV<-* dp++ P GG+K+SG gG++gl eY++ mFLJ00209 470 DPAV--PTGGCKESGSS-WHGGPDGLYEYLQP--L 499 //