hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj07125/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00205  ( 634 res)   mfj07125

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RICIN    Ricin-type beta-trefoil                        117.8    1.2e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RICIN      1/1     491   621 ..     1   135 []   117.8  1.2e-30

Alignments of top-scoring domains:
RICIN: domain 1 of 1, from 491 to 621: score 117.8, E = 1.2e-30
                   *->rgyfliiggntglCLdvngnsesksdGnpvqlwdChg.......ggn
                      +g ++ +g  tglC d+  +      G+p+ l++C +++++   +++
   mFLJ00205   491    WGEIRNVG--TGLCTDTKLGT----LGSPLRLETCIRgrgeaawNSM 531  

                   QlWkltYnesdgairi.....nsdlCLtvng...tvtlysCdgtdkgndn
                   Q++++t   +   ir++++++ +++C ++ +++++vtly+C++   +++n
   mFLJ00205   532 QVFTFT---WREDIRPgdpqhTKKFCFDAVShtsPVTLYDCHS---MKGN 575  

                   QkWevnkdgtirnpknskkgvdsglcLdvkdgn.kvqlwtcngsdapnQk
                   Q W+++kd+t+++p        sg c+d +++++ v ++tcn+s+ + Q+
   mFLJ00205   576 QLWKYRKDKTLYHP-------VSGSCMDCSESDhRVFMNTCNPSS-LTQQ 617  

                   Wife<-*
                   W fe   
   mFLJ00205   618 WLFE    621  

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