hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj07125/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00205  ( 634 res)   mfj07125

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Ricin_B_lectin  Ricin-type beta-trefoil lectin domain   139.4    6.3e-38   1
Glycos_transf_2 Glycosyl transferase family 2           127.8      2e-34   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Glycos_transf_2   1/1     179   364 ..     1   149 []   127.8    2e-34
Ricin_B_lectin    1/1     490   618 ..     1   141 []   139.4  6.3e-38

Alignments of top-scoring domains:
Glycos_transf_2: domain 1 of 1, from 179 to 364: score 127.8, E = 2e-34
                   *->SviiPtYNe.ekyleetleSllnQt.tyenfEiivvDDgS.tDgtve
                      S+iiP++Ne+++ l++t++S+ln +++    Ei++vDD S++ + ++
   mFLJ00205   179    SIIIPFHNEgWSSLLRTVHSVLNRSpPELVAEIVLVDDFSdREHLKK 225  

                   iaeeyak.dprirvirleenlGlaaArNaGlkkAtGdydyiaflDaDdev
                    +e+y++  p +r++r ++++Gl + r+ G+++AtGd  +i+flD+++e 
   mFLJ00205   226 PLEDYMAlFPSVRILRTKKREGLIRTRMLGASAATGD--VITFLDSHCEA 273  

                   .pdwlekllellekngadivig.rv.in.e.n.kgr..............
                   + +wl++ll+++ +n++ iv++ ++ i+++++++    ++  ++  + + 
   mFLJ00205   274 nVNWLPPLLDRIARNRKTIVCPmIDvIDhDdFrYETqagdamrgafdwem 323  

                   ........llgk.l.l.l.l.v.fli.snalyrrealekll<-*
                     ++ + +    + + +++++ +++ ++ +++ r+++++l+   
   mFLJ00205   324 yykripipPELQkAdPsDpFeSpVMAgGLFAVDRKWFWELG    364  

Ricin_B_lectin: domain 1 of 1, from 490 to 618: score 139.4, E = 6.3e-38
                   *->asgeirnvgrasglCLDvpggntadggpvglypChg....gggnd.Q
                      a+geirnvg  +glC D+    ++ g+p++l +C  +++++ +n+ Q
   mFLJ00205   490    AWGEIRNVG--TGLCTDTK--LGTLGSPLRLETCIRgrgeAAWNSmQ 532  

                   lWfetltgdgeirsngnssl..lCLdvsgggtadGskvvlwpCngg.gnQ
                    +  t+t++ +ir+++ ++++++C+d+ +++    s+v+l++C++ +gnQ
   mFLJ00205   533 VF--TFTWREDIRPGDPQHTkkFCFDAVSHT----SPVTLYDCHSMkGNQ 576  

                   rWdydggngdgtirnrkdsglCLDvkggsangtkvilwktCdWkngsanQ
                    W y++   d+t+++++ sg C+D ++   ++++v+++ tC+  ++s++Q
   mFLJ00205   577 LWKYRK---DKTLYHPV-SGSCMDCSE---SDHRVFMN-TCN--PSSLTQ 616  

                   qW<-*
                   qW   
   mFLJ00205   617 QW    618  

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