hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msp/msp00191/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00204  ( 618 res)   msp00191

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                         166.1    3.5e-45   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3        1/3       2    51 ..     1    58 []    29.4  0.00049
SH3        2/3     201   258 ..     1    58 []    73.6  2.5e-17
SH3        3/3     562   618 .]     1    58 []    65.1  8.6e-15

Alignments of top-scoring domains:
SH3: domain 1 of 3, from 2 to 51: score 29.4, E = 0.00049
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                           + D +  + d L+F+k++++tv++++dd+W eG l+   k+G
   mFLJ00204     2    -----MKDRDQ-DKDCLTFTKDEVLTVIRRVDDNWAEGMLG--DKIG 40   

                   lfPsnYVeeie<-*
                   +fP  YVe+ +   
   mFLJ00204    41 IFPLLYVELND    51   

SH3: domain 2 of 3, from 201 to 258: score 73.6, E = 2.5e-17
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       ++ AlY+y++q  dEL ++kG++++vlek+ dgW++G   +tG  G
   mFLJ00204   201    NVYLALYAYKPQKNDELELRKGEMYRVLEKCQDGWFKGASLKTGVSG 247  

                   lfPsnYVeeie<-*
                    fP+nYV+++    
   mFLJ00204   248 VFPGNYVTPVS    258  

SH3: domain 3 of 3, from 562 to 618: score 65.1, E = 8.6e-15
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      e+++++ +y +q+e E+ +k+GDi+ v++k++dgW++G+l+r+G++G
   mFLJ00204   562    ERYRVVVSYPPQSEAEIELKEGDIVFVHKKHEDGWFKGTLQRNGRTG 608  

                   lfPsnYVeeie<-*
                   lfP+++V e     
   mFLJ00204   609 LFPGSFV-ESF    618  

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