hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msp/msp00191/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00204 ( 618 res) msp00191 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3_1 SH3 domain 142.7 6.7e-39 3 SH3_2 Variant SH3 domain 73.0 6.3e-18 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SH3_2 1/3 1 49 [. 1 69 [] 12.1 0.34 SH3_1 1/3 7 50 .. 1 58 [] 20.1 0.0014 SH3_1 2/3 201 257 .. 1 58 [] 67.1 3.7e-16 SH3_2 2/3 202 257 .. 1 69 [] 29.8 6.5e-05 SH3_1 3/3 562 618 .] 1 58 [] 56.5 5.8e-13 SH3_2 3/3 563 618 .] 1 69 [] 32.2 1.2e-05 Alignments of top-scoring domains: SH3_2: domain 1 of 3, from 1 to 49: score 12.1, E = 0.34 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd.gww ++d + dk+ L+++k++v+ vi ++ d++w mFLJ00204 1 ---EMKDRDQ--DKDC------LTFTKDEVLTVI-----RRVDdNWA 31 lgeslggGrrrRGlvPssaveel<-* +g++ g + G +P +v el mFLJ00204 32 EGML--GDKI--GIFPLLYV-EL 49 SH3_1: domain 1 of 3, from 7 to 50: score 20.1, E = 0.0014 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++ d L+F+k +v+tv+ ++dd+W +g l +k mFLJ00204 7 -----------QDKDCLTFTKDEVLTVIRRVDDNWAEGMLG---DKI 39 GliPsNYVepv<-* G++P YVe++ mFLJ00204 40 GIFPLLYVELN 50 SH3_1: domain 2 of 3, from 201 to 257: score 67.1, E = 3.7e-16 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++ ALY+Y+++ dEL ++kG+ + vlek dgW kg ++ tg mFLJ00204 201 NVYLALYAYKPQKNDELELRKGEMYRVLEKCQDGWFKGASLKTG-VS 246 GliPsNYVepv<-* G +P NYV+pv mFLJ00204 247 GVFPGNYVTPV 257 SH3_2: domain 2 of 3, from 202 to 257: score 29.8, E = 6.5e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++ a+ y++ ++++e L l+kG+ +v+ +k +dgw mFLJ00204 202 VYLALYAYKP-QKNDE------LELRKGEMYRVL----EKCQDGWFK 237 geslggGrrrRGlvPssaveel<-* g sl+ G+ G++P ++v ++ mFLJ00204 238 GASLKTGVS--GVFPGNYVTPV 257 SH3_1: domain 3 of 3, from 562 to 618: score 56.5, E = 5.8e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke +++++ Y+++++ E+ +k+GD+++v++k++dgW kg l+++g ++ mFLJ00204 562 ERYRVVVSYPPQSEAEIELKEGDIVFVHKKHEDGWFKGTLQRNG-RT 607 GliPsNYVepv<-* Gl+P ++Ve mFLJ00204 608 GLFPGSFVESF 618 SH3_2: domain 3 of 3, from 563 to 618: score 32.2, E = 1.2e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++r++ +y + +++ e + lk+Gd+v v +k dgw mFLJ00204 563 RYRVVVSYPP-QSEAE------IELKEGDIVFVH----KKHEDGWFK 598 geslggGrrrRGlvPssaveel<-* g++ +Gr+ Gl+P s+ve mFLJ00204 599 GTLQRNGRT--GLFPGSFVESF 618 //