hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06260/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00201  ( 640 res)   mpm06260

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C1Q      Complement component C1q domain.               274.9    6.3e-78   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1Q        1/1     505   640 .]     1   146 []   274.9  6.3e-78

Alignments of top-scoring domains:
C1Q: domain 1 of 1, from 505 to 640: score 274.9, E = 6.3e-78
                   *->eykakprsAFsvilsyterpPpEmNpgqpirFdkvLyNqqghYdpsT
                      e +a++++AF++ l+   ++P+    g+p+rFd+ LyN+++ Y+p+T
   mFLJ00201   505    ELSAHATPAFTAVLT--SPFPA---SGMPVRFDRTLYNGHSGYNPAT 546  

                   GkFtCpvPGvYyFsYhievkgrRqnvkvsLmkngiqvlrvvstydeyqkg
                   G+FtCpv GvYyF+Yh++vkg+  nv+v+L+kn++++++   tydey+kg
   mFLJ00201   547 GIFTCPVGGVYYFAYHVHVKGT--NVWVALYKNNVPATY---TYDEYKKG 591  

                   lydvaSGgalLqLeqGDqVWLelddeeknglyageevdSvFSGFLLfpd<
                   ++d+aSGga+LqL+++DqVW++++++++ngly++e+ +S+FSGFLL+p+ 
   mFLJ00201   592 YLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT  640  

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   mFLJ00201     -    -    

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