hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj37062/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00197  ( 362 res)   mfj37062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM_1    SAM domain (Sterile alpha motif)                46.7    5.3e-10   1
SAM_2    SAM domain (Sterile alpha motif)                25.8    0.00098   1
SAM_PNT  Sterile alpha motif (SAM)/Pointed domain       -11.3       0.16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM_1      1/1     292   358 ..     1    66 []    46.7  5.3e-10
SAM_2      1/1     291   360 ..     1    72 []    25.8  0.00098
SAM_PNT    1/1     273   361 ..     1    91 []   -11.3     0.16

Alignments of top-scoring domains:
SAM_1: domain 1 of 1, from 292 to 358: score 46.7, E = 5.3e-10
                   *->dgwsvesVgeWLesigl..lgqYidnFlaagyidgdtllqlteeDLe
                      + w+ve+V ++ ++ + + lg +++ F ++++idg +ll+l  + ++
   mFLJ00197   292    STWTVEDVVRFVKDADPeaLGPHVELF-RKHEIDGNALLLLRSDMIM 337  

                   dlGvtllGHrkkIlssIqgLk<-*
                   +    +lG+++k+++ I++Lk   
   mFLJ00197   338 KYLGLKLGPALKLCYHIDKLK    358  

SAM_2: domain 1 of 1, from 291 to 360: score 25.8, E = 0.00098
                   *->veswslesvaeWLe...siglegqYkdnFsdqgitglellllrltee
                      +++w++e+v  ++++ +   l g +++ F++++i+g  ll l  + +
   mFLJ00197   291    PSTWTVEDVVRFVKdadPEAL-GPHVELFRKHEIDGNALL-LLRSDM 335  

                   dLaklalGitsvghRkkilskiqelkqq<-*
                    + k  lG  ++g+ +k+  +i++lkq    
   mFLJ00197   336 IM-K-YLGL-KLGPALKLCYHIDKLKQA    360  

SAM_PNT: domain 1 of 1, from 273 to 361: score -11.3, E = 0.16
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                       +s + e + ++ p     +P  Wt ++V++++++a  e   + ++ 
   mFLJ00197   273    APSPSPEVQDTRRPS--SRNPSTWTVEDVVRFVKDADPEALGPHVE- 316  

                   dfskFadmsGkeLCslskedFleraPl..fvGdiLwehLqiLrkas<-*
                    f+k  +++G +L++l       +++l+ +++ +L  h+++L+ a    
   mFLJ00197   317 LFRKH-EIDGNALLLLRSDMIMKYLGLklGPALKLCYHIDKLKQAK    361  

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