hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mng/mng09109/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00193  ( 475 res)   mng09109

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF      Epidermal growth factor-like domain.            51.6      1e-10   4
EGF_Lam  Laminin-type epidermal growth factor-like do    38.6    8.6e-07   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/4      14    46 ..     1    32 []    25.5   0.0072
EGF_Lam    1/4      19    58 ..     1    42 []     7.2      2.2
EGF        2/4      57    89 ..     1    32 []    16.3      4.2
EGF_Lam    2/4      61   101 ..     1    42 []    27.3   0.0021
EGF        3/4     100   132 ..     1    32 []    23.0    0.041
EGF_Lam    3/4     105   144 ..     1    42 []    13.5     0.68
EGF        4/4     143   175 ..     1    32 []    10.6       30
EGF_Lam    4/4     148   192 ..     1    42 []    13.5     0.68

Alignments of top-scoring domains:
EGF: domain 1 of 4, from 14 to 46: score 25.5, E = 0.0072
                   *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C+++  C nG     GtC+++   C C+ pG++g++C+   
   mFLJ00193    14    NCSntcTCKNG-----GTCVseNGNCvCA-PGFRGpSCQ    46   

EGF_Lam: domain 1 of 4, from 19 to 58: score 7.2, E = 2.2
                   *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC<
                      C C     +G+C +++G C+ C p+  G + C +  C pG y++ C 
   mFLJ00193    19    CTCK---NGGtCVSeNGNCV-CAPGFRG-PSCQRP-CPPGRYgkRC  58   

                   -*
                     
   mFLJ00193     -    -    

EGF: domain 2 of 4, from 57 to 89: score 16.3, E = 4.2
                   *->eCa..pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C +  C n+    +  C+++  tC+C  +G+tg+ C    
   mFLJ00193    57    RCVqcKCNNN----HSSCHpsDGTCsCL-AGWTGpDCS    89   

EGF_Lam: domain 2 of 4, from 61 to 101: score 27.3, E = 0.0021
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C Cn     +++++C+p++G C  C  + tG + C ++ C pG+++ 
   mFLJ00193    61    CKCN-----NnhssCHPsDGTCS-CLAGWTG-PDCSEA-CPPGHWgl 99   

                   gC<-*
                    C   
   mFLJ00193   100 KC    101  

EGF: domain 3 of 4, from 100 to 132: score 23.0, E = 0.041
                   *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C++   C++G     GtC++   +C C  pG+tg++C    
   mFLJ00193   100    KCSqlcQCHHG-----GTCHpqDGSCiCT-PGWTGpNCL    132  

EGF_Lam: domain 3 of 4, from 105 to 144: score 13.5, E = 0.68
                   *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC<
                      C+C+    +G+C+p++G C+ C p+ tG ++C +  C p  ++ +C 
   mFLJ00193   105    CQCH---HGGtCHPqDGSCI-CTPGWTG-PNCLEG-CPPRMFgvNC  144  

                   -*
                     
   mFLJ00193     -    -    

EGF: domain 4 of 4, from 143 to 175: score 10.6, E = 30
                   *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C++   C+ G       C++++  C Cp pG +g  C+   
   mFLJ00193   143    NCSqlcQCDLGE-----MCHpkTGACvCP-PGHSGaDCK    175  

EGF_Lam: domain 4 of 4, from 148 to 192: score 13.5, E = 0.68
                   *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy....
                      C+C+     G+ C+p+tG C+ C p+  G   C         ++  +
   mFLJ00193   148    CQCD----LGemCHPkTGACV-CPPGHSG-ADCK--MGSQESFtimp 186  

                   ....gC<-*
                   +++ +    
   mFLJ00193   187 tspvTH    192  

//