hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11002/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00191  ( 916 res)   mpm11002

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    47.0    2.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SANT       1/1     664   718 ..     1    53 []    47.0  2.4e-09

Alignments of top-scoring domains:
SANT: domain 1 of 1, from 664 to 718: score 47.0, E = 2.4e-09
                   *->kkgeWteeEdelLleavkkyGkg..tdndWakIakelpgRtpkqcre
                        + Wt eE+++L++++ ky++++   ++W+kIa+el++Rt+kq+ +
   mFLJ00191   664    FNQLWTVEEQKKLEQLLLKYPPEevESRRWQKIADELGNRTAKQVAS 710  

                   rwrnllkp<-*
                   r ++++ +   
   mFLJ00191   711 RVQKYFIK    718  

//