hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11002/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00191  ( 916 res)   mpm11002

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Myb_DNA-binding Myb-like DNA-binding domain              39.4    8.3e-08   1
ZZ              Zinc finger, ZZ type                     21.2     0.0031   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Myb_DNA-binding   1/1     665   716 ..     1    65 []    39.4  8.3e-08
ZZ                1/1     830   878 ..     1    46 []    21.2   0.0031

Alignments of top-scoring domains:
Myb_DNA-binding: domain 1 of 1, from 665 to 716: score 39.4, E = 8.3e-08
                   *->rgrWtaeEdellveavekhGkgfgIrlslt.kanWkkIaeklgpgss
                       + Wt eE+++l++++ k++          +  +W kIa++lg    
   mFLJ00191   665    NQLWTVEEQKKLEQLLLKYPPE------EVeSRRWQKIADELG---- 701  

                   nnvlgrtaeqcklryykyk<-*
                       +rta+q+ +r +ky+   
   mFLJ00191   702 ----NRTAKQVASRVQKYF    716  

ZZ: domain 1 of 1, from 830 to 878: score 21.2, E = 0.0031
                   *->ihkvytCdgCkeapiigvRYhClrCs...dYDLCqsCfstGhkagkH
                       h +++Cd C+  pi gvR+hC+ C+++   D C+sC    h +  H
   mFLJ00191   830    QHVGFKCDNCGVEPIQGVRWHCQDCPpemSLDFCDSCSDCPHETDIH 876  

                   km<-*
                   k    
   mFLJ00191   877 KE    878  

//