hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21569/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00189  ( 871 res)   mbg21569

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MORN     MORN repeat                                    103.9      3e-27   8
VPS9     Vacuolar sorting protein 9 (VPS9) domain        31.9    2.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MORN       1/8     380   402 ..     1    23 []    29.9    6e-05
MORN       2/8     403   425 ..     1    23 []     4.4       12
MORN       3/8     431   453 ..     1    23 []     6.6      5.5
MORN       4/8     454   476 ..     1    23 []    12.0      0.9
MORN       5/8     481   503 ..     1    23 []    19.6     0.07
MORN       6/8     505   527 ..     1    23 []    18.1     0.12
MORN       7/8     528   550 ..     1    23 []    16.3     0.21
MORN       8/8     551   574 ..     1    23 []     6.9      4.9
VPS9       1/1     752   856 ..     1   120 []    31.9  2.3e-06

Alignments of top-scoring domains:
MORN: domain 1 of 8, from 380 to 402: score 29.9, E = 6e-05
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      Y+Gew + k+hGkG+++w+dG     
   mFLJ00189   380    YDGEWCRAKPHGKGTLKWPDGRN    402  

MORN: domain 2 of 8, from 403 to 425: score 4.4, E = 12
                   *->YeGewknGkrhGkGvytwadGdr<-*
                       +G++ +G+ hG+G++  +  +    
   mFLJ00189   403    HVGTFYQGLEHGFGICLVPQASE    425  

MORN: domain 3 of 8, from 431 to 453: score 6.6, E = 5.5
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      Y  +w++G+++ +G++ + +  +   
   mFLJ00189   431    YKCHWREGRMCEYGICEYGTDEV    453  

MORN: domain 4 of 8, from 454 to 476: score 12.0, E = 0.9
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      Y G ++ G+rhG+G++  a       
   mFLJ00189   454    YKGYFQAGLRHGFGILESAPQAP    476  

MORN: domain 5 of 8, from 481 to 503: score 19.6, E = 0.07
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      Y G+w +G+r+G+G+    d +    
   mFLJ00189   481    YTGHWERGQRSGYGIEEDRDRGE    503  

MORN: domain 6 of 8, from 505 to 527: score 18.1, E = 0.12
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      Y G w+ ++rhG Gv +   G +   
   mFLJ00189   505    YIGMWQADQRHGPGVVVTQAGVC    527  

MORN: domain 7 of 8, from 528 to 550: score 16.3, E = 0.21
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      Y+G+++++k+ G G++ + d +    
   mFLJ00189   528    YQGTFQGDKMAGPGILLCEDDSL    550  

MORN: domain 8 of 8, from 551 to 574: score 6.9, E = 4.9
                   *->YeGewknGk.rhGkGvytwadGdr<-*
                      YeG++ ++++  GkG+ t+++G +   
   mFLJ00189   551    YEGTFTRDLtLLGKGKVTFPNGFT    574  

VPS9: domain 1 of 1, from 752 to 856: score 31.9, E = 2.3e-06
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT
                      +  a + L ++   +  Pr+Kl++l +  + I    + + +++    
   mFLJ00189   752    FLTATECLQKII-TTVHPREKLEVLEKTYGEI----EATVSRV---- 789  

                   DPm.CGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrl
                     ++C Y   ++ Dd+LPlLiYv+++a+  hL+++i +i++  +p     
   mFLJ00189   790 --LgCKY--KLPMDDLLPLLIYVVSRARIQHLGAEIHLIRDMMDP--V-H 832  

                   LsGEegYYLTsLeaAlaFIkslde<-*
                   + G   + LT Le+ +++I + d    
   mFLJ00189   833 TGGLHDFLLTALESCYEHIQKEDM    856  

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