hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06919/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00187  ( 488 res)   mbg06919

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LER      leucine rich region                            258.0    7.8e-73   1
ZnF_C2H2 zinc finger                                    133.1      3e-35   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LER        1/1      52   162 ..     1   113 []   258.0  7.8e-73
ZnF_C2H2   1/6     302   324 ..     1    23 []    25.6   0.0067
ZnF_C2H2   2/6     330   352 ..     1    23 []    26.4   0.0038
ZnF_C2H2   3/6     358   380 ..     1    23 []    26.8   0.0029
ZnF_C2H2   4/6     386   408 ..     1    23 []    30.7  0.00021
ZnF_C2H2   5/6     414   436 ..     1    23 []    27.4    0.002
ZnF_C2H2   6/6     442   464 ..     1    23 []    26.8   0.0029

Alignments of top-scoring domains:
LER: domain 1 of 1, from 52 to 162: score 258.0, E = 7.8e-73
                   *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL
                      pE+fRqrFR+F+Yq+t+GPREAL RL+ELC+qWLRPE+++KEQILEL
   mFLJ00187    52    PEVFRQRFRRFCYQNTFGPREALNRLKELCHQWLRPEVNSKEQILEL 98   

                   LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah
                   LVLEQFL+ILP+ELQ+W +e++P+SGEEAVtLlEdLe  Ld  gqqV+++
   mFLJ00187    99 LVLEQFLSILPKELQVWLQEYRPDSGEEAVTLLEDLE--LDLSGQQVPGQ 146  

                   vhgqevLleemvplga<-*
                   vhg e+L + +vpl++   
   mFLJ00187   147 VHGPEMLARGVVPLDP    162  

ZnF_C2H2: domain 1 of 6, from 302 to 324: score 25.6, E = 0.0067
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk+f++ ++L+rH  +H   
   mFLJ00187   302    HRCDE-CGKCFTRSsSLIRHKIIH    324  

ZnF_C2H2: domain 2 of 6, from 330 to 352: score 26.4, E = 0.0038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs  ++L+ H+r+H   
   mFLJ00187   330    YECNE-CGKAFSLNsNLVLHQRIH    352  

ZnF_C2H2: domain 3 of 6, from 358 to 380: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs+ ++L+ H+r+H   
   mFLJ00187   358    HECNE-CGKAFSHSsNLILHQRIH    380  

ZnF_C2H2: domain 4 of 6, from 386 to 408: score 30.7, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L++H+r+H   
   mFLJ00187   386    YECNE-CGKAFSQSsDLTKHQRIH    408  

ZnF_C2H2: domain 5 of 6, from 414 to 436: score 27.4, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ + L+ H r+H   
   mFLJ00187   414    YECSE-CGKAFNRNsYLILHRRIH    436  

ZnF_C2H2: domain 6 of 6, from 442 to 464: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ + L+ H r+H   
   mFLJ00187   442    YKCTK-CGKAFTRSsTLTLHHRIH    464  

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