hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06919/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00187  ( 488 res)   mbg06919

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SCAN     SCAN domain                                    206.9    3.1e-58   1
zf-C2H2  Zinc finger, C2H2 type                         183.9    2.5e-51   6
GATA     GATA zinc finger                                14.4      0.036   1
DUF1610  Domain of unknown function (DUF1610)            10.3        0.9   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SCAN       1/1      50   143 ..     1    96 []   206.9  3.1e-58
zf-C2H2    1/6     302   324 ..     1    24 []    33.2  6.1e-06
GATA       1/1     307   345 ..     1    36 []    14.4    0.036
zf-C2H2    2/6     330   352 ..     1    24 []    35.6  1.1e-06
zf-C2H2    3/6     358   380 ..     1    24 []    36.5  6.3e-07
DUF1610    1/2     368   393 ..     1    24 []     9.2      1.3
zf-C2H2    4/6     386   408 ..     1    24 []    40.8  3.1e-08
zf-C2H2    5/6     414   436 ..     1    24 []    35.5  1.2e-06
DUF1610    2/2     416   449 ..     1    24 []     3.9      9.2
zf-C2H2    6/6     442   464 ..     1    24 []    34.9  1.9e-06

Alignments of top-scoring domains:
SCAN: domain 1 of 1, from 50 to 143: score 206.9, E = 3.1e-58
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                      p+pE+fRqrFR+f+Yq t GPrEAL rL+eLChqWLrPEv++KEQIL
   mFLJ00187    50    PDPEVFRQRFRRFCYQNTFGPREALNRLKELCHQWLRPEVNSKEQIL 96   

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLVLEQFL+ILPkElQ w qe  P SgEEaVtLlEdL  elD  gqqV 
   mFLJ00187    97 ELLVLEQFLSILPKELQVWLQEYRPDSGEEAVTLLEDL--ELDLSGQQV  143  

                   -*
                     
   mFLJ00187     -    -    

zf-C2H2: domain 1 of 6, from 302 to 324: score 33.2, E = 6.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+F+r+s+L rH+ +H   
   mFLJ00187   302    HRCD-ECGKCFTRSSSLIRHKIIH    324  

GATA: domain 1 of 1, from 307 to 345: score 14.4, E = 0.036
                   *->CsnCgttkTplWRrgp....dGnrtLCNACGLyykkhgvk<-*
                      C  C t++++l R+   +++++++ +CN CG  + ++  +   
   mFLJ00187   307    CGKCFTRSSSLIRHKIihtgEKPY-ECNECGKAFSLNSNL    345  

zf-C2H2: domain 2 of 6, from 330 to 352: score 35.6, E = 1.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs +snL  H+r+H   
   mFLJ00187   330    YECN-ECGKAFSLNSNLVLHQRIH    352  

zf-C2H2: domain 3 of 6, from 358 to 380: score 36.5, E = 6.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+Fs++snL  H+r+H   
   mFLJ00187   358    HECN-ECGKAFSHSSNLILHQRIH    380  

DUF1610: domain 1 of 2, from 368 to 393: score 9.2, E = 1.3
                   *->CtsCGaelaprelg..vkypCPnCGf<-*
                       +s +  l+ r ++++ +y C +CG+   
   mFLJ00187   368    SHSSNLILHQRIHSgeKPYECNECGK    393  

zf-C2H2: domain 4 of 6, from 386 to 408: score 40.8, E = 3.1e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++s+L++H+r+H   
   mFLJ00187   386    YECN-ECGKAFSQSSDLTKHQRIH    408  

zf-C2H2: domain 5 of 6, from 414 to 436: score 35.5, E = 1.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+r+s L  H+r+H   
   mFLJ00187   414    YECS-ECGKAFNRNSYLILHRRIH    436  

DUF1610: domain 2 of 2, from 416 to 449: score 3.9, E = 9.2
                   *->CtsCG............aelaprelgvkypCPnCGf<-*
                      C+ CG+  ++++    +++++ re   +y+C +CG+   
   mFLJ00187   416    CSECGkafnrnsylilhRRIHTRE--KPYKCTKCGK    449  

zf-C2H2: domain 6 of 6, from 442 to 464: score 34.9, E = 1.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F+r+s+L+ H r+H   
   mFLJ00187   442    YKCT-KCGKAFTRSSTLTLHHRIH    464  

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