hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mng/mng13225/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00186  ( 293 res)   mng13225

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RA       Ras association (RalGDS/AF-6) domain            90.5      2e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1     147   239 ..     1   102 []    90.5    2e-22

Alignments of top-scoring domains:
RA: domain 1 of 1, from 147 to 239: score 90.5, E = 2e-22
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      +t++ r+++ +++     ++ k+l++s++tT+++Viq ll+kf + d
   mFLJ00186   147    ATTDKRTSFYLPL-----DAIKQLHISSTTTVSEVIQGLLKKFMVVD 188  

                   edpeeYvLvevlp..sggkErvLlddenPlqlqklwprdaksprqsslrF
                    +p++++L+ + ++++++++++L   ++Pl+l++l+++d     ++ l+F
   mFLJ00186   189 -NPQKFALFKRIHkdGQVLFQKLSIADYPLYLRLLAGPD-----TDVLSF 232  

                   vLrkrdd<-*
                   vL++++    
   mFLJ00186   233 VLKENET    239  

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