hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mng/mng13225/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00186  ( 293 res)   mng13225

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RA       Ras association (RalGDS/AF-6) domain            53.0    6.6e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1     149   239 ..     1    98 []    53.0  6.6e-12

Alignments of top-scoring domains:
RA: domain 1 of 1, from 149 to 239: score 53.0, E = 6.6e-12
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                       +  + +y++ ++    k +++s++tT++eVi+ lL+Kf +  d+p+
   mFLJ00186   149    TDKRTSFYLPLDA---IKQLHISSTTTVSEVIQGLLKKFMV-VDNPQ 191  

                   dyvLvEvslvlerggeer.rvLpddEkPlqiqlqlkrdaqvrsrFlLrrr
                   +++L+     + ++g+    +L+  ++Pl+++l  ++d++   +F+L+++
   mFLJ00186   192 KFALFK---RIHKDGQVLfQKLSIADYPLYLRLLAGPDTD-VLSFVLKEN 237  

                   ed<-*
                   e    
   mFLJ00186   238 ET    239  

//