hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03276/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00183  ( 416 res)   mpm03276

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cyclin_N Cyclin, N-terminal domain                        1.9      0.011   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cyclin_N   1/1      39   192 ..     1   146 []     1.9    0.011

Alignments of top-scoring domains:
Cyclin_N: domain 1 of 1, from 39 to 192: score 1.9, E = 0.011
                   *->diyaylrelEeeflplpppdyldqqpqpds...iditpkMRaiLvDW
                      d + +     +e+ +lp+ d l + p+  s+ ++d +   R   +  
   mFLJ00183    39    DRLYSGVLITLENCLLPD-DKLRFTPSMSSgldVDTETGLRVVGCEL 84   

                   LveVhekfkLspeTLyLavnylDRFLskkpvpklkvkrkklQLvgvtcll
                   +      ++L +    +   ++ RF  +k++    v +  +  v+ +c++
   mFLJ00183    85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSF----V-KHSMEHVSMACVH 129  

                   iAsKyEEiksdvypPsvkdfvyita...............sDnqayt..k
                   +AsK+EE      p  + d++ + ++ ++ ++++++ +   D   y + k
   mFLJ00183   130 LASKIEEA-----PRRIRDVINVFHrlrhlrekkkpvplvLDQ-EYVnlK 173  

                   keilrMEkliLktLkfdls<-*
                    +i+++E+ +Lk L+f +    
   mFLJ00183   174 NQIIKAERRVLKELGFCVH    192  

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