hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00056/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00182  ( 693 res)   mbh00056

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    45.2    8.9e-09   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3     555   594 ..     1    46 []    39.2  5.7e-07
WD40       2/3     604   641 ..     1    46 []     2.4  2.1e+02
WD40       3/3     644   686 ..     1    46 []     3.7  1.3e+02

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 555 to 594: score 39.2, E = 5.7e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +  l++++gHtg  +V +va  ++       ++++sgs+D+t+rlW
   mFLJ00182   555    HqIRLQSFPGHTG--AVKCVAALSSE------DFFLSGSkDRTVRLW 593  

                   d<-*
                       
   mFLJ00182   594 P    594  

WD40: domain 2 of 3, from 604 to 641: score 2.4, E = 2.1e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      ++    ++  H++  +V  v            ++++s++ g +++Wd
   mFLJ00182   604    EtASRLIYAQHRK--SVFYVGQLEAP------QYVVSCD-GAVHVWD 641  

                   <-*
                      
   mFLJ00182     -     -    

WD40: domain 3 of 3, from 644 to 686: score 3.7, E = 1.3e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k lrt +  ++  p t+va+ p        + +  +s+D+t+r+ 
   mFLJ00182   644    TgKTLRTVDPSDSRVPLTAVAVMPAP-----HTSITMASsDSTLRFV 685  

                   d<-*
                   d   
   mFLJ00182   686 D    686  

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