hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00056/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00182  ( 693 res)   mbh00056

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        37.5      3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/1     557   594 ..     1    38 []    37.5    3e-07

Alignments of top-scoring domains:
WD40: domain 1 of 1, from 557 to 594: score 37.5, E = 3e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        l++++gHt++V cva   +   +++sgS D+t+++W    
   mFLJ00182   557    IRLQSFpGHTGAVKCVAALSS-EDFFLSGSKDRTVRLWP    594  

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