hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01832/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00175  ( 2118 res)   mtg01832

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     325.9    2.7e-93   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/7      19   119 ..     1    92 []    63.0  3.9e-14
C2         2/7     273   369 ..     1    92 []    61.8  8.7e-14
C2         3/7     432   546 ..     1    92 []    45.9  5.4e-09
C2         4/7    1191  1299 ..     1    92 []    66.0  4.7e-15
C2         5/7    1368  1475 ..     1    92 []     7.0       13
C2         6/7    1617  1716 ..     1    92 []    56.1  4.6e-12
C2         7/7    1850  1979 ..     1    92 []    26.9   0.0029

Alignments of top-scoring domains:
C2: domain 1 of 7, from 19 to 119: score 63.0, E = 3.9e-14
                   *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN
                       L++ + +A nLp+ ++++++DP + +  ++ +++Tkv+k++    N
   mFLJ00175    19    MLCCLLARASNLPnvkkdrrsDPVASLIfrgvkkRTKVIKNSV---N 62   

                   PvWnEesetFeFevpp......s.LeieVyDk......dfiGrvtippnn
                   PvWnE    Fe ++   + +++s+L + V+D+++ ++++f+G++ ip   
   mFLJ00175    63 PVWNE---GFEWDLKGipldqsSeLLVVVKDHetmgrnRFLGEAKIP--- 106  

                   ahqhsadglihlsell.ggrh.kl<-*
                              l+e+l  +  +     
   mFLJ00175   107 -----------LQEVLaTPSLsAS    119  

C2: domain 2 of 7, from 273 to 369: score 61.8, E = 8.7e-14
                   *->tLtvkiisArnLp....DPYVkvs......kTkvvkktlsgfNPvWn
                      +++v +i++r+Lp+ +  P Vkv+  +++++T++ k++    +P +n
   mFLJ00175   273    QIRVQVIEGRQLPgvniKPVVKVTaagqtkRTRIQKGN----SPLFN 315  

                   EesetFeFevpp.......s.LeieVyDk......dfiGrvtippnnahq
                   E   t++F+v +++ +  + ++ i+V D+++ +++ ++G+++++      
   mFLJ00175   316 E---TLFFNVFDsplelfdEpIFITVVDSrslrtdALLGEFRMD------ 356  

                   hsadglihlsell.ggrh.kl<-*
                           + ++ +++rh  l   
   mFLJ00175   357 --------VGTVYrEPRHaYL    369  

C2: domain 3 of 7, from 432 to 546: score 45.9, E = 5.4e-09
                   *->tLtvkiisArnLp........................DPYVkvs...
                       +++k+++A++Lp  ++   ++ +   + ++++++  DP+V+vs  +
   mFLJ00175   432    HFCLKLFRAEDLPqmddavmdnvkqifgfdsnkknlvDPFVEVSfag 478  

                   ...kTkvvkktlsgfNPvWnEesetFeFevpp....s.LeieVyDk....
                   +  ++k+ +kt    NP+Wn+    ++++   ++   +++i+V+D+++ +
   mFLJ00175   479 kmlCSKILEKTA---NPQWNQ---NITLPAMFpsmcEkMRIRVMDWdrlt 522  

                   ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++d + +++++              +s++   g+  +    
   mFLJ00175   523 hnDTVATTYLG--------------MSKISaTGGEiEV    546  

C2: domain 4 of 7, from 1191 to 1299: score 66.0, E = 4.7e-15
                   *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN
                       L++++++Ar+Lp  ++++ +DPY++vs  ++++kT v k+tl   N
   mFLJ00175  1191    HLRCYLYQARDLPamdkdsfsDPYAIVSflhqsqKTVVEKNTL---N 1234 

                   PvWnEesetFeFevpp............s.LeieVyDk......dfiGrv
                   P+W++   t+ F+ ++  +++ +  +++  +++e+yD+++ + ++f+Gr+
   mFLJ00175  1235 PTWDQ---TLIFYEIEifgepasiaehpPcIVVELYDHdtygadEFMGRC 1281 

                   tippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ p             l+++++  + +     
   mFLJ00175  1282 ICQPS------------LERMPrLAWFpLT    1299 

C2: domain 5 of 7, from 1368 to 1475: score 7.0, E = 13
                   *->tLtvkiisArnLp...........DPYVkvs......kTkvvkktls
                      + t   i A +L++ ++    + + P  +v+ ++++ ++ v+++  +
   mFLJ00175  1368    QRTAIEILAWGLRnmksyqmasisSPSLVVEcggqtvQSCVIRNLRK 1414 

                   gfNPvWnEesetFeFevpp.......s.LeieVyDk......dfiGrvti
                     NP ++   +t+++ev  ++++    +++++V D +  +++ ++G++ti
   mFLJ00175  1415 --NPNFDV--CTLFMEVMLpredlycPpIVVKVIDNrqfgrrPVVGQCTI 1460 

                   ppnnahqhsadglihlsell.ggrh.kl<-*
                   ++             l+  l  + + +    
   mFLJ00175  1461 RS-------------LENFLcDPYSaES    1475 

C2: domain 6 of 7, from 1617 to 1716: score 56.1, E = 4.6e-12
                   *->tLtvkiisArnLp........DPYVkvs........kTkvvkktlsg
                      +++++i++A +L +++++++ DPY+k+s ++++ +++ + +++tl  
   mFLJ00175  1617    LVRIYIVRAFGLQpkdpngkcDPYIKISigkksvsdQDNYIPCTL-- 1661 

                   fNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnna
                     Pv++    +Fe++++ + +++L+i++yD++  ++++ iG+++i+    
   mFLJ00175  1662 -EPVFGK---MFELTCTLpleKdLKITLYDYdllskdEKIGETVID---- 1703 

                   hqhsadglihlsell.ggrh.kl<-*
                             l+  l +    ++   
   mFLJ00175  1704 ----------LENRLlSKFGaRC    1716 

C2: domain 7 of 7, from 1850 to 1979: score 26.9, E = 0.0029
                   *->tLtvkiisArnLp............DPYVkvs.........kTkvvk
                       L++ i   ++ + ++ + ++ + +D YVk +  +   +++kT v+ 
   mFLJ00175  1850    FLRCIIWNTKDVIlddlsltgekmsDIYVKGWmvgfeehkqKTDVHY 1896 

                   ktls.gfNPvWnEesetFeFevpp........................s.
                   ++l +  N  W      F F+  p ++     +++   + ++++++ +++
   mFLJ00175  1897 RSLGgEGNFNWRF---VFPFDYLPaeqvcavakkdafwrldkteskipAr 1943 

                   LeieVyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl
                   ++++++D ++ + +df+G ++++              l+++++  ++ + 
   mFLJ00175  1944 VVFQIWDNdkfsfdDFLGSLQLD--------------LNRMPkPAKTaEK 1979 

                   <-*
                      
   mFLJ00175     -     -    

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