hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mtg/mtg01832/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00175 ( 2118 res) mtg01832 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- C2 C2 domain 386.9 2e-112 7 FerI FerI (NUC094) domain 189.3 6e-53 1 FerB FerB (NUC096) domain 179.4 5.8e-50 1 FerA FerA (NUC095) domain 128.0 1.8e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C2 1/7 20 104 .. 1 88 [] 85.8 8.6e-22 C2 2/7 274 354 .. 1 88 [] 57.7 2.5e-13 FerI 1/1 355 426 .. 1 72 [] 189.3 6e-53 C2 3/7 433 531 .. 1 88 [] 70.2 4.3e-17 FerA 1/1 732 797 .. 1 67 [] 128.0 1.8e-34 FerB 1/1 824 899 .. 1 79 [] 179.4 5.8e-50 C2 4/7 1192 1282 .. 1 88 [] 87.2 3.4e-22 C2 5/7 1372 1459 .. 1 88 [] 15.9 0.056 C2 6/7 1618 1701 .. 1 88 [] 77.0 3.9e-19 C2 7/7 1851 1964 .. 1 88 [] 1.6 0.94 Alignments of top-scoring domains: C2: domain 1 of 7, from 20 to 104: score 85.8, E = 8.6e-22 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl L + + +A nLp++ k + sDP + + + g kk+Tkvik++ mFLJ00175 20 LCCLLARASNLPNVK-KDRRSDPVASLIFRG----VKKRTKVIKNSV 61 NPvWNEtFtFevpppdlqe..tLeieVyDydrfgrddflGevs<-* NPvWNE F++++ +l+++++L + V+D+ ++gr++flGe++ mFLJ00175 62 NPVWNEGFEWDLKGIPLDQssELLVVVKDHETMGRNRFLGEAK 104 C2: domain 2 of 7, from 274 to 354: score 57.7, E = 2.5e-13 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl +rV vie++ Lp + P Vkv+ g q+k+T++ k++ mFLJ00175 274 IRVQVIEGRQLPG----V-NIKPVVKVTAAG----QTKRTRIQKGN- 310 NPvWNEtFtFevpppdlqe...tLeieVyDydrfgrddflGevs<-* +P +NEt+ F+v + +l+ ++++ i+V D+++++ d +lGe++ mFLJ00175 311 SPLFNETLFFNVFDSPLELfdePIFITVVDSRSLRTDALLGEFR 354 FerI: domain 1 of 1, from 355 to 426: score 189.3, E = 6e-53 *->lDvGtVYdePeHafmrKWlLLsDPdDfsaGaKGYLKvsmfVvGkGDe +DvGtVY+eP+Ha++rKWlLLsDPdDfsaGa+GYLK s++V+G+GDe mFLJ00175 355 MDVGTVYREPRHAYLRKWLLLSDPDDFSAGARGYLKASLCVLGPGDE 401 ppvekKdseeDkDDIEsNLLLPaGV<-* +p+ kKd++eDk+DIE+NLL+P+GV mFLJ00175 402 APLDKKDPSEDKEDIEGNLLRPTGV 426 C2: domain 3 of 7, from 433 to 531: score 70.2, E = 4.3e-17 *->LrVtvieAknLppkDf...............kngksDPYVkvslggd +++++A++Lp +D+ ++ ++ + +++k+ + DP+V+vs+ g mFLJ00175 433 FCLKLFRAEDLPQMDDavmdnvkqifgfdsnKKNLVDPFVEVSFAG- 478 kkdqkkkTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrdd ++ +k+ +kt NP+WN+ t++ +p++ e+ +i V+D+dr++++d mFLJ00175 479 ---KMLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRVMDWDRLTHND 525 flGevs<-* + ++ mFLJ00175 526 TVATTY 531 FerA: domain 1 of 1, from 732 to 797: score 128.0, E = 1.8e-34 *->lalkakdsaasvgelwLkLideliediaSktLpdiegkpsvTaLDrq lalka++s+++v++l+++L+del++d +S++L+di+++ps+T+LD++ mFLJ00175 732 LALKAQCSSEDVDALVAQLTDELLAD-CSQPLCDIHEIPSATHLDQY 777 IlkLRkrkLsqIrEaAlrlk<-* +l+LR+r+LsqI+EaAl+lk mFLJ00175 778 LLRLRTRHLSQIKEAALALK 797 FerB: domain 1 of 1, from 824 to 899: score 179.4, E = 5.8e-50 *->PQnSlPDifIWMlsgeKRvAYaRiPAhdvLyStvgeeetGkdCGKvQ PQnSlPDi+IWMl+g+KRvAY+R+PAh vL+S++g ++G++CGK+Q mFLJ00175 824 PQNSLPDIIIWMLQGDKRVAYQRVPAHEVLFSRRGPSYCGRNCGKLQ 870 TvfLklPgekgnGpAGWkVpaklrlyLWLGLs<-* T+fLk+P+e +G+ ++p+++r++LW+GLs mFLJ00175 871 TIFLKYPMEGMPGA---RMPVQIRIKLWFGLS 899 C2: domain 4 of 7, from 1192 to 1282: score 87.2, E = 3.4e-22 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl Lr+++++A++Lp++D k + sDPY+ vs++ q +kT v k+tl mFLJ00175 1192 LRCYLYQARDLPAMD-KDSFSDPYAIVSFLH----QSQKTVVEKNTL 1233 NPvWNEtFtFe.v....pppdlqe...tLeieVyDydrfgrddflGevs< NP+W++t+ F++++ + p++ +e+++++++e+yD+d++g d+f+G+++ mFLJ00175 1234 NPTWDQTLIFYeIeifgEPASIAEhppCIVVELYDHDTYGADEFMGRCI 1282 -* mFLJ00175 - - C2: domain 5 of 7, from 1372 to 1459: score 15.9, E = 0.056 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikkt. +++ +n + + + + s+P +v++gg q+ ++ vi++ + mFLJ00175 1372 IEILAWGLRNMKSYQ-MASISSPSLVVECGG----QTVQSCVIRNLr 1413 lNPvWN.....EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<- NP ++ + + +++ +dl ++++++V D++ fgr ++G+++ mFLJ00175 1414 KNPNFDvctlfMEVMLP--REDLYCpPIVVKVIDNRQFGRRPVVGQCT 1459 * mFLJ00175 - - C2: domain 6 of 7, from 1618 to 1701: score 77.0, E = 3.9e-19 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt +r+++++A +L pkD +ngk+DPY k+s+g+ ++ + i+ t mFLJ00175 1618 VRIYIVRAFGLQPKD-PNGKCDPYIKISIGK---KsVSDQDNYIPCT 1660 lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* l Pv+ +F++ ++p ++ L+i++yDyd +++d+ +Ge++ mFLJ00175 1661 LEPVFGKMFELTCTLPLEKD-LKITLYDYDLLSKDEKIGETV 1701 C2: domain 7 of 7, from 1851 to 1964: score 1.6, E = 0.94 *->LrVtvieAknLppkDf..kng..ksDPYVkvslggdkkdqkkkTkvi Lr+ + k+ + D+ +++g+++sD YVk ++ g + +k+kT v+ mFLJ00175 1851 LRCIIWNTKDVIL-DDlsLTGekMSDIYVKGWMVGFEE-HKQKTDVH 1895 kktl....NPvWNEtFtFevpppdlqetLeieVyDydrfgr......... ++l++++N W +F F+ +p q+ V +d f+r ++++++ + mFLJ00175 1896 YRSLggegNFNWRFVFPFD-YLPAEQV---CAVAKKDAFWRldkteskip 1941 ...............ddflGevs<-* + + ++++ + ddflG + mFLJ00175 1942 arvvfqiwdndkfsfDDFLGSLQ 1964 //