hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mej/mej02159/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00171 ( 401 res) mej02159 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MFS_1 Major Facilitator Superfamily 76.4 5.9e-19 1 DUF81 Domain of unknown function DUF81 -62.9 0.16 1 Nucleoside_tran Nucleoside transporter -146.7 0.7 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MFS_1 1/1 13 351 .. 1 396 [] 76.4 5.9e-19 Nucleoside_tran 1/1 38 351 .. 1 344 [] -146.7 0.7 DUF81 1/1 103 372 .. 1 292 [] -62.9 0.16 Alignments of top-scoring domains: MFS_1: domain 1 of 1, from 13 to 351: score 76.4, E = 5.9e-19 *->lflatflaglgrsllgpalp.ylassleesslgqtdtlspteiglll l+ +++l+gl +sl+g + + mFLJ00171 13 LSAGMVLSGLFTSLFGLGYFwNIH----------------------- 36 safslgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllafa mFLJ00171 37 ---------------------------M---------------------- 37 sstslwlllilrallqGlgggllapaaaaliadwfppeergralgivsag lw +++ + Gl + +p++ + ++ wf +++rg+ +gi+++ mFLJ00171 38 ----LWYFVLIQIC-NGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSH 82 fglGaalggpllggllaalgwwgssgtfWraaFlilgilallaallllvl +++G +lg++++g ++ ++ W F+++gi++++++++ ++ mFLJ00171 83 TSVGNILGSLIAGVWVNQH---------WGLSFIVPGIITAIMGVI--TF 121 fllpeppakksakpeeeeali............................. ++l e p++ +p+ ++++++++++++++ +++ ++++++ + +++ mFLJ00171 122 LFLIEYPEDVDCTPPRHHDDPekeqdnpedpvnspyssresnvdiaasss 171 ..........plr.lll.p.lllillalflllaaflalltflplylllpl ++++++++ ++ ++l+ p+++ + l+l+++ ++ +++l +lply + + mFLJ00171 172 keqgpepeaiSFLgALRiPgVIEFSLCLLFAKLVSYTFLYWLPLYIFNVA 221 lls.saglslsalaagllllalglggllgglllggrlsdrlgrglarkge ++s ++++ ls+ ++ +gg++gg+++ g +sd ++ mFLJ00171 222 HFSaKEAGDLST--------LFDVGGIIGGIMA-GLISDYTNS------- 255 aeaerrrllllgllllalgllllafapsls.alllvallllGlgfggvfp r ++ + l+l+a ++l+ ++++++ + +v l+++G+ + g ++ mFLJ00171 256 ----RATTCCIMLILAAPMMFLYNYIGQNGiTSSIVMLIICGVLVNGPYA 301 alnala.....sdlappea.qerGtasGlyntagslggalgpllgGllld ++++ ++ + ++ + + ++ +t+++++ +gs+g+algpll+Gl+ mFLJ00171 302 LITTAVsadlgTHESLKGNaKALSTVTAIIDGTGSIGAALGPLLAGLISP 351 <-* mFLJ00171 - - Nucleoside_tran: domain 1 of 1, from 38 to 351: score -146.7, E = 0.7 *->limivviNsmgnAllQn....SlfGlAgefPskYtqavliGqnlaGv l v+i n+l Q ++ +S+ g k +++ G + mFLJ00171 38 LWYFVLIQI-CNGLVQTtgwpSVVTCVGNWFGKGKRGFIMGIWNS-- 81 lvsllmialtkAsnseDPvslsesAllYFita.lvvvviCiicylvlkkl +s+ i + ++++ + l Fi++++++ ++ +i +l+l mFLJ00171 82 HTSVGNILGSLIAGVW----VNQHWGLSFIVPgIITAIMGVITFLFLIEY 127 rF......yryylqrkdGHiTdlagpsEretkeeliqedeegipesgskv + + + ++ r++ + E+ + e+ + + + +s mFLJ00171 128 PEdvdctpPRHHDDPE----------KEQDNPEDPVNSPYS---SRES-- 162 aLvrelsgtfepnseqlenvflGkvsffviLakfpvlalsvvliftvtls +++ ++ +++eq + +sf L + v +s++l+f +s mFLJ00171 163 ----NVDIAASSSKEQGPEPEA--ISFLGALRIPGVIEFSLCLLFAKLVS 206 vFPaptaevvsSealskWekqYFmpvlcF.........LlFNlFDllGri ++ W + Y+ v+ F+ ++ ++ ++lF ++ +G i mFLJ00171 207 YTFLY------------WLPLYIFNVAHFsakeagdlsTLFDVGGIIGGI 244 laavfm.wPgqKFdsrwlpvlvilRllFiPLFllCnykprDssrGDEalP +a+ + ++ +sr + + l l+ P +l ny+ + mFLJ00171 245 MAGLISdYT----NSRATTCCIML-ILAAPMMFLYNYIGQ--NG------ 281 vfFesdalFiilmalfafsnGYLsSLaMmyaPksVdnpheae..tAGalt ++ +++++++ + Y +L+ ++ + he+ ++ A al+ mFLJ00171 282 ---ITSSIVMLIICGVLVNGPY--ALITTAVSADLG-THESLkgNAKALS 325 vfFLi......lGLalGavfSfvira<-* + + i +++++ G alG +++ +i mFLJ00171 326 TVTAIidgtgsIGAALGPLLAGLISP 351 DUF81: domain 1 of 1, from 103 to 372: score -62.9, E = 0.16 *->lllflagllaGfvaglfGfGGGvlavPlLlllgpvvgvpsdl..... l f++ G++ + G ++++l+l+ + p+d++ +++ mFLJ00171 103 GLSFIV---PGIITAIMG-----VITFLFLIEY-----PEDVdctpp 136 ..........................ppkqAigtsllvalftslssvlsh ++++++++++++++++ +++ +++++++++A+++s ++ +s l mFLJ00171 137 rhhddpekeqdnpedpvnspyssresNVDIAASSSKEQGPEPEAISFLGA 186 rkrgrlnlklgiilalvslllgsliGallGivvgalllkaldaeklllil ++ ++ ++ l+ ++v+ +l +l + ++ mFLJ00171 187 LRIPG--------------VIEFSLCLLFAKLVSYTFLYWLPLYIFN--- 219 ggilliyaalyllkdarsKakvlskkveriekskdlesmlLkgswyevdl + + a l mFLJ00171 220 VAHFSAKEAGDLS------------------------------------- 232 sslivrsrfnpplallaGfliGflsglf.......GvGGGplvvpllvll +l+ +G+++G+++gl+++ ++++ ++++++ +++ mFLJ00171 233 -----------TLFDVGGIIGGIMAGLIsdytnsrATTCCIMLILAAPMM 271 lglpvkvavatslffifltstsgvisyllG..............lllGav + +++ +++ ++++l + ++++ +++ ++ + + ++++ l G+ mFLJ00171 272 FLYNYIGQNGITSSIVMLIICGVLVNGPYAlittavsadlgtheSLKGNA 321 llllavllll..gailGsfiGarlarkvspkvirrlfailll..vlglkl l +v+++++++ +G+ +G+ la +sp ++f+ l+ +vl++ l mFLJ00171 322 KALSTVTAIIdgTGSIGAALGPLLAGLISPTGWNNVFYMLISadVLACLL 371 l<-* l mFLJ00171 372 L 372 //