hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msj/msj09064/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00168 ( 631 res) msj09064 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Amino_oxidase Flavin containing amine oxidoreductase 373.7 1.9e-108 1 DAO FAD dependent oxidoreductase -9.8 0.00028 1 Pyr_redox Pyridine nucleotide-disulphide oxidored -10.1 0.66 1 Pyr_redox_2 Pyridine nucleotide-disulphide oxidored -37.6 0.44 1 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal d -62.7 0.54 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pyr_redox 1/1 61 132 .. 1 102 [] -10.1 0.66 AlaDh_PNT_C 1/1 40 164 .. 1 184 [] -62.7 0.54 Pyr_redox_2 1/1 61 237 .. 1 265 [] -37.6 0.44 DAO 1/1 61 502 .. 1 402 [] -9.8 0.00028 Amino_oxidase 1/1 69 504 .. 1 481 [] 373.7 1.9e-108 Alignments of top-scoring domains: Pyr_redox: domain 1 of 1, from 61 to 132: score -10.1, E = 0.66 *->rvvVvGGGyIGlElAsalaklGseVTvverldrlLrglDeeaiakil +vvVvG+G+ Gl +A +l++ G++VT++e+ +r+ ++i+ mFLJ00168 61 KVVVVGAGVAGLVAAKMLSDAGHKVTILEADNRIG--------GRIF 99 qerleknGievllnttveeieggdgdgkvssVvlentktgdgkeleaDlV ++++ +++ g+ + ++ + ++ ++ mFLJ00168 100 --TFRDE---------KTGWI-GELGA----MRMP-----SSHRI-LHKL 127 lvAiG<-* G mFLJ00168 128 CRTLG 132 AlaDh_PNT_C: domain 1 of 1, from 40 to 164: score -62.7, E = 0.54 *->lekygggfgmLlggaggVpPAkVvViGgGVaGlqAaatAkgLGAvVt + + + lg + +P kVvV G+GVaGl Aa++ G++Vt mFLJ00168 40 HDYEQLLKVVTLGLNRTSKPQKVVVVGAGVAGLVAAKMLSDAGHKVT 86 ilDvrparleqleslfagfvetdrvlsdeekedaeg.gGYAkemseefla i le+ + +++++ + + +++ G e+ + + mFLJ00168 87 I-------LEADNRIGGRIFTFR-----------DEkTGWIGELGAMRMP 118 snaeliaeavkeaDlVIgtvLiPGakAPkLVtremvksMkPGSViVDvAi s+ ++++++ mFLJ00168 119 SSHRILHKLCR--------------------------------------- 129 dqGdnGnvEttrptTtiHsdpt.yvvdGVvh..ygvaNlPg<-* G n +t t+ +++ t +v+ V+ ++y v +P mFLJ00168 130 TLGLN----LTQFTQ--YDENTwTEVHNVKLrnYVVEKMPE 164 Pyr_redox_2: domain 1 of 1, from 61 to 237: score -37.6, E = 0.44 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->dvvIIGgGpAGlaAAiraarlgfgkkglkvalieketlgGGtcynrg +vv++G+G AGl+AA+ + + g+kv+++e+++ GG + mFLJ00168 61 KVVVVGAGVAGLVAAKMLSDA-----GHKVTILEADNRIGGRIF--- 99 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx cipkkvllgaaevgeelkhaadgayGiidagevkfdwakllarke.vveq +++e +++ mFLJ00168 100 -----------TFRDEK---------------------------TgWIG- 110 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx lrkkgvevllgtevtgidvi.gftvklkdgetVVegedgrgkallggeet + g+ + +i + mFLJ00168 111 --ELGAMR-MPS-SHRILHKlC---------------------------- 128 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltydkliiATGarprrppnepiPGvdlelklevftlgrsvitsdDalalr r + G +l ++ + ++ +t +lr mFLJ00168 129 --------------RTL------GLNLT---QFTQYDENTWTEVHNVKLR 155 RF xx xxxxxxxxxxxxxxxxxx xxxxxxx xx ek.lslfpkkkeeaagklalr...................rrPnlte.La + ++ +p+ + + ++++ +++ + n + + mFLJ00168 156 NYvVEKMPE-----------KlgynlnnrerghspediyqMALN-KAfKD 193 RF xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx LlekaGlelder.......iGgIvVDeylrTssvpgIyAaGDvaeggl<- L +++G++ ++ ++++ + + e + s p + GDv + + mFLJ00168 194 L-KALGCKKAMNkfnkhtlLEYLL--EEGNL-SRPAVQLLGDVMSEEG 237 RF * mFLJ00168 - - DAO: domain 1 of 1, from 61 to 502: score -9.8, E = 0.00028 *->DVvVIGGGivGlstAyhLakrGlsVtllErg.digsGaSgrnaGllh +VvV+G+G++Gl +A L+ +G++Vt+lE++++ig + ++ mFLJ00168 61 KVVVVGAGVAGLVAAKMLSDAGHKVTILEADnRIG-------GRIF- 99 pg.....................................lryleqgrWll +++ ++++ + + + +++++ ++ ++ + + + ++y+e+ mFLJ00168 100 TFrdektgwigelgamrmpsshrilhklcrtlglnltqfTQYDENT---- 145 ldlvreagkera.llarla.esrdlwre...................... ++ +++l ++ ++ ++e+ + + +++++++++++ + mFLJ00168 146 ---------WTEvHNVKLRnYVVEKMPEklgynlnnrerghspediyqma 186 ............................leleelgidcdfrrtGglylar ++ ++ + + ++ ++ ++++ + l lee ++++ + l + mFLJ00168 187 lnkafkdlkalgckkamnkfnkhtlleyL-LEEGNLSRP--AVQLLGDVM 233 deeeld.lerlaaalralGlpedvelLdaeelrelePgls.pglvgalfy +ee++ l +a+alra+ ls++ + ++ mFLJ00168 234 SEEGFFyL-SFAEALRAHAC------------------LSdR--LRYSRI 262 pddghvdParlvraLaraAealGveilegteVtgleregggrvvVeTedG +++ + P++l+ +L + +l +++V+++ + + v+V+ + mFLJ00168 263 VGGWDLLPRALLSSLS-------GALLLNAPVVSITQGRND-VRVHIATS 304 .....eirAfiAdkVVnAaGawsdelarllgl.l.prIvPYfLkplrdip +++++++A d+V ++a + + + ++++p p mFLJ00168 305 lhsekTLTA---DVVLLTASGPALQ-----RItFsP-------------P 333 lrPvrGqvlvteplpealapallppdeavgds.............rgvyi l r ++l+ + a ++l +++++++ ++ +++++++++++++++ mFLJ00168 334 LTRKRQEALRALHYVAAS-KVFLSFRRPFWHEehiegghsntdrpSRLIF 382 ipre..GgvliGattd.grldfgggpeevsgdidvdlarleellerarrl +p +++G +l+ + t ++ + +g ++ l+ +l+++++l mFLJ00168 383 YPAQgeGSLLLASYTWsDAAAPFAGLSTDQT--------LRLVLQDVAAL 424 f.PqL..............................adadilrawaGlRpl ++P + + ++++ ++ ++++++++ +++ +++ ++ w ++ mFLJ00168 425 HgPVVfrlwdgrgvvkrwaedphsqggfvvqpplyGREAEDYDW----SA 470 tpDglPiigtpDtskPviGrvpglpglyvatGhgghGltlapaiGkllAe + + + G++ lp+ +v t +G +A mFLJ00168 471 PFGRI----------YFAGEHTALPHGWVETAVK---------SGLRAAV 501 l<-* + mFLJ00168 502 R 502 Amino_oxidase: domain 1 of 1, from 69 to 504: score 373.7, E = 1.9e-108 *->laGLaAAreLlraGfqdVtvlEArdRvGGRvrtvrlkggdadgflie +aGL+AA+ L++aG+ +Vt+lEA++R+GGR++t+r++ ++g++ e mFLJ00168 69 VAGLVAAKMLSDAGH-KVTILEADNRIGGRIFTFRDE---KTGWIGE 111 lGaqwflgaypnllnlllelglelglelfpftgdffldl.rrggrrpdvp lGa+++ p+ +++l +l + lgl+l ft+++++ ++ ++ ++ ++ mFLJ00168 112 LGAMRM----PSSHRILHKLCRTLGLNLTQFTQYDENTWtEVHNVKLRNY 157 t.lplp...lelel.leeeirl.l.ll.allllapelleldlesfsdrls + +p++ ++ +++e++++ + ++ al++++++l++l++++ +++++ mFLJ00168 158 VvEKMPeklGYNLNnRERGHSPeDiYQmALNKAFKDLKALGCKKAMNKFN 207 aqgflelaldelfrsllagalgflelelsarlallslrlldledggatfp ++++le++l+ ++l++ a+ +l++ +s + + ++++l+ + + + mFLJ00168 208 KHTLLEYLLE--EGNLSRPAVQLLGDVMSEEGFFYLSFAEALRAHACLSD 255 ggglklplGgldqllaaaagllggrvrlntrVrsirqegdgvtvttedGe ++++ +++Gg+d+l++a++ l g ++ln++V+si+q++++v+v++ + mFLJ00168 256 RLRYSRIVGGWDLLPRALLSSLSGALLLNAPVVSITQGRNDVRVHIATSL 305 tgtkgdesetieaDaVivtvPlgvlkrhlilflPpLpaakqeairrlgfg + +++t++aD V +t++ ++l+r i+f+PpL +++qea+r l+++ mFLJ00168 306 H-----SEKTLTADVVLLTASGPALQR--ITFSPPLTRKRQEALRALHYV 348 svsKvflefetpfwpengdhlfgaykgdlfgllvtdgedlsrggyvldts ++sKvfl f++pfw+e++ +++g++ td ++ +++++ mFLJ00168 349 AASKVFLSFRRPFWHEEH---------IEGGHSNTDR----PSRLIFYPA 385 kssgsapsggrgvllsyvlgdgagnreledlsdeelleavledLrkllgs + +g + +l+sy+++d+a +++ ls +++l++vl+d+++l+g+ mFLJ00168 386 QGEG------SLLLASYTWSDAA--APFAGLSTDQTLRLVLQDVAALHGP 427 dredvpdPvtagdyrdtvvsrWstdpyargsysyppvgqd.srdrpalre ++++ +d + +vv+rW++dp+++g++ p++ ++ + ++++ mFLJ00168 428 VVFRLWDGR-------GVVKRWAEDPHSQGGFVVQPPLYGrEAEDYDWSA 470 pvgndnnkdgdpglyfAGehtsggypgtveGAveSGlraArril<-* p+g ++yfAGeht+ + g+ve Av SGlraA ri+ mFLJ00168 471 PFG---------RIYFAGEHTALPH-GWVETAVKSGLRAAVRIN 504 //