hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00833/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00164  ( 1012 res)   mtj00833

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                       42.2    6.8e-08   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/6     231   264 ..     1    34 []     8.2       58
TPR        2/6     334   367 ..     1    34 []    22.0    0.086
TPR        3/6     462   495 ..     1    34 []     5.8  1.1e+02
TPR        4/6     539   572 ..     1    34 []     0.3  4.7e+02
TPR        5/6     579   612 ..     1    34 []     4.1  1.7e+02
TPR        6/6     868   901 ..     1    34 []    14.9       10

Alignments of top-scoring domains:
TPR: domain 1 of 6, from 231 to 264: score 8.2, E = 58
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ ++ lG ++ ++ ++ +A  y+e+AL   +     
   mFLJ00164   231    ARLCLLLGRLCARKLKLSQARVYFEEALGALEGS    264  

TPR: domain 2 of 6, from 334 to 367: score 22.0, E = 0.086
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+a++ l+  y +l++ +eA+ y+e+ L+l+++    
   mFLJ00164   334    ARACFLLARHYTHLKQPEEALPYLERLLRLNRDA    367  

TPR: domain 3 of 6, from 462 to 495: score 5.8, E = 1.1e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         +  l+++y +  +y +Ai++ ++A e d      
   mFLJ00164   462    GPLYASLAQLYSHHQQYSQAIAFMSQAAEADTAA    495  

TPR: domain 4 of 6, from 539 to 572: score 0.3, E = 4.7e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                          +  ++a+ ++g+  +A e y +AL ++      
   mFLJ00164   539    CVMMNMVAMALKRMGRTRQAAEGYFRALHMAYAQ    572  

TPR: domain 5 of 6, from 579 to 612: score 4.1, E = 1.7e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a +l n G ++l+ g    A  y+++A+ l  +    
   mFLJ00164   579    AVVLANFGALCLQAGARSLAQHYLREAVGLFSQV    612  

TPR: domain 6 of 6, from 868 to 901: score 14.9, E = 10
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        a+ +l+ ++++lg  + A+ ++ kAL+l  +    
   mFLJ00164   868    RVAYHRLATLHHRLGHGELAEHFFLKALSLCSSP    901  

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