hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00833/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00164  ( 1012 res)   mtj00833

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        54.6    2.1e-12   5
TPR_1    Tetratricopeptide repeat                        38.0    2.2e-07   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/5     231   264 ..     1    34 []     7.0      5.2
TPR_2      1/5     231   264 ..     1    34 []    12.8      7.1
TPR_1      2/5     334   367 ..     1    34 []    22.5     0.01
TPR_2      2/5     334   367 ..     1    34 []    29.0  0.00011
TPR_1      3/5     462   495 ..     1    34 []     2.0       21
TPR_2      3/5     462   495 ..     1    34 []    12.2      8.3
TPR_1      4/5     579   612 ..     1    34 []     0.8       28
TPR_2      4/5     579   612 ..     1    34 []     4.4       67
TPR_1      5/5     868   901 ..     1    34 []    15.6     0.49
TPR_2      5/5     868   901 ..     1    34 []    14.4      2.8

Alignments of top-scoring domains:
TPR_1: domain 1 of 5, from 231 to 264: score 7.0, E = 5.2
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a+ +  lG ++ ++ k+ +A  ++e+AL   +     
   mFLJ00164   231    ARLCLLLGRLCARKLKLSQARVYFEEALGALEGS    264  

TPR_2: domain 1 of 5, from 231 to 264: score 12.8, E = 7.1
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a+++ +lG++++++ ++ +A+ ++e+Al   ++    
   mFLJ00164   231    ARLCLLLGRLCARKLKLSQARVYFEEALGALEGS    264  

TPR_1: domain 2 of 5, from 334 to 367: score 22.5, E = 0.01
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a+a++ l+  y +l++++eA+ ++e+ L+l+++    
   mFLJ00164   334    ARACFLLARHYTHLKQPEEALPYLERLLRLNRDA    367  

TPR_2: domain 2 of 5, from 334 to 367: score 29.0, E = 0.00011
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a+a+++l++ y +l+++eeAl ++e+ l+l+ ++   
   mFLJ00164   334    ARACFLLARHYTHLKQPEEALPYLERLLRLNRDA    367  

TPR_1: domain 3 of 5, from 462 to 495: score 2.0, E = 21
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                         y  l+++y + ++y +Ai++  +A e d      
   mFLJ00164   462    GPLYASLAQLYSHHQQYSQAIAFMSQAAEADTAA    495  

TPR_2: domain 3 of 5, from 462 to 495: score 12.2, E = 8.3
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        ++  l+++y + ++y +A+++  +A e d  +   
   mFLJ00164   462    GPLYASLAQLYSHHQQYSQAIAFMSQAAEADTAA    495  

TPR_1: domain 4 of 5, from 579 to 612: score 0.8, E = 28
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a ++ n G+++l+ g    A  ++++A+ l  +    
   mFLJ00164   579    AVVLANFGALCLQAGARSLAQHYLREAVGLFSQV    612  

TPR_2: domain 4 of 5, from 579 to 612: score 4.4, E = 67
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a +l n G +++++g    A +++++A+ l+ +    
   mFLJ00164   579    AVVLANFGALCLQAGARSLAQHYLREAVGLFSQV    612  

TPR_1: domain 5 of 5, from 868 to 901: score 15.6, E = 0.49
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        ay +l+ ++++lg  + A+ ++ kAL+l  +    
   mFLJ00164   868    RVAYHRLATLHHRLGHGELAEHFFLKALSLCSSP    901  

TPR_2: domain 5 of 5, from 868 to 901: score 14.4, E = 2.8
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        a+++l+ ++ +lg+ e A++++ kAl+l  +    
   mFLJ00164   868    RVAYHRLATLHHRLGHGELAEHFFLKALSLCSSP    901  

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