hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph01789/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00163 ( 798 res) mph01789 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MAGE MAGE family 109.2 7.8e-29 1 Extensin_2 Extensin-like region -142.0 0.63 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Extensin_2 1/1 83 487 .. 1 385 [] -142.0 0.63 MAGE 1/1 35 612 .. 1 254 [] 109.2 7.8e-29 Alignments of top-scoring domains: Extensin_2: domain 1 of 1, from 83 to 487: score -142.0, E = 0.63 *->lltlvvalvslslpseasakYsYsSPPPpekpY.............. + ++ + +s ++a + s PP +++ +++ + +++++ mFLJ00163 83 ISEAPPTSQATAAASGPNASPQSSQPPTANEKAdtevsaaaarpktg 129 ......vYkSPPpPspkyvykSPPPpkkpYvYsSPPPPsyvykSPPPPkp + ++ k P s k P + + ++S Pk mFLJ00163 130 fkaqnaTTKGPNDYSQARNAKEMPKNQSKAAFKSQNGT---------PKG 170 yvYkSPPpP.kyvYkSPPpPvykYkSPPPPthsppPpyvykSPPPPpkky ++ S + kS +k P y+ P P+ mFLJ00163 171 PHAASDFSQaAPTGKSAKKSEMAFKGQNSTK--AGPGTTYNFPQSPSANE 218 vykSpPpptPvYkYkSPPPPp............................. P + + P ++ +++ +++++++ ++++ ++++++ mFLJ00163 219 MTNNQPKTAKAWNDTTKVPEAdgaaaqtsadgsqtqnvesrtiirgkrtr 268 ......................yvYkspPpPvkkripyvYkSPPPPpP.Y + ++ + ++++++++++ + + ++s+P Pv + PP pP+ mFLJ00163 269 kvnnlnveennsgdqrraslasGNWRSAPVPVTT-----QQNPPGAPPnV 313 vYkSpPppvkkyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvY v++ p p +++ + PP +s+p ++ + + mFLJ00163 314 VWQTPLAWQ------NPSGWQNQ-TARQTPPAAR----QSPPARQTPSAW 352 kSPPPPkksYkspsppkyVYkSp...PpPvipykYkSPPPPkkkyspaPr + P + + p + +++ p P P+ P P ++ mFLJ00163 353 QNPVAWQNPVI--WPNPVIWQNPviwPNPI------VWPGPIVWPN---- 390 kpyvYkSPPPPtyvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpip p ++S t+ ++SpP + p+ ++sP ++ ++ pP mFLJ00163 391 -PMAWQS----TPGWQSPPS----WQAPPSWQSPQDWQGPPDWQVPPD-- 429 piksssppPvyvYkSpPppvysPPPPyvYssPPPPvy.vynsaPvykksP s pP + S p ++ P P PP + +P ++s mFLJ00163 430 ----WSMPPDWSFPSDWPFPPDWIPA---DWPIPPDWqNLRPSPNLRSSS 472 PkhhYiYsSPPPphh<-* PP p mFLJ00163 473 NSRASQNQGPPQPRD 487 MAGE: domain 1 of 1, from 35 to 612: score 109.2, E = 7.8e-29 *->rgQkSklckrEerlqargEt..qglvgaQapaaeeqqeeasssspsq + Q S l +rE r+ a+ +++ gl g Qa a++e +a + ++ mFLJ00163 35 LRQGSAL-ARETRAMAQKPDggAGLRGFQAEASVE--DSALLVQT-- 76 rPvSsffSytlaLvlgtleevpaAggspspPqsPQgs............. l +++ ++A +++s++ ++ +++ +++++++++ mFLJ00163 77 --------------LMEAIQISEA-PPTSQATAAASGpnaspqssqppta 111 .................................................. +++ +++ + +++++ + ++ +++++++ ++ ++ ++ ++++++ mFLJ00163 112 nekadtevsaaaarpktgfkaqnattkgpndysqarnakempknqskaaf 161 .................................................. +++++++++++ ++ ++ +++++ ++++ +++++++ +++++ + + mFLJ00163 162 ksqngtpkgphaasdfsqaaptgksakksemafkgqnstkagpgttynfp 211 .................................................. ++++ ++ +++++++ + +++++ ++ ++ +++ +++++++ ++++ mFLJ00163 212 qspsanemtnnqpktakawndttkvpeadgaaaqtsadgsqtqnvesrti 261 .................................................. +++++++ ++ + ++++++++++ + +++ ++ + + ++++++++ ++ mFLJ00163 262 irgkrtrkvnnlnveennsgdqrraslasgnwrsapvpvttqqnppgapp 311 .................................................. + +++ +++++ ++++ +++++ +++++ +++++ +++ +++ mFLJ00163 312 nvvwqtplawqnpsgwqnqtarqtppaarqspparqtpsawqnpvawqnp 361 .................................................. +++ +++ +++ +++ +++ +++++ +++++ + +++ mFLJ00163 362 viwpnpviwqnpviwpnpivwpgpivwpnpmawqstpgwqsppswqapps 411 ........................................asstitavaa +++++ +++++ + +++ + +++ + +++ + +++ + + + + mFLJ00163 412 wqspqdwqgppdwqvppdwsmppdwsfpsdwpfppdwipaDWPIPPDWQN 461 ktslsqSdEGssSqvvLqeEEgpstSqaltsteslfkdpLtrKvaeLVqF l++S +sS +++ Sq +++ + L + ++ LV + mFLJ00163 462 ---LRPSPNLRSSS-------NSRASQNQGPPQPRDVALLQERANKLVKY 501 LLrKYkmKepvTKAEMLksViknYKdhFPeIFrKASerlelVFGidLKEV L++K+ K p+ ++EML +i+ Y+d PeI +A + le FGi LKE+ mFLJ00163 502 LMLKDYTKVPIKRSEMLRDIIREYTDVYPEIIERACFVLEKKFGIQLKEI 551 DPtgHsYvLVtkLgLsydGlLsdnqsmPktGLLiivLgvIFmkGncApEE D H Y+L+++ s G+L+ + Pk GLL+ +Lg+IFm+Gn+A+E mFLJ00163 552 DKEEHLYILISTPE-SLAGILGTTKDTPKLGLLLVILGIIFMNGNRATEA 600 eIWEfLsvlGvY<-* + WE+L+++G++ mFLJ00163 601 VLWEALRKMGLR 612 //