hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej01253/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00162  ( 718 res)   mej01253

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MBT      mbt repeat                                     408.9   4.7e-119   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBT        1/4     229   307 ..     1    77 []    71.1  2.4e-17
MBT        2/4     342   407 ..     1    77 []   113.4  4.4e-30
MBT        3/4     447   524 ..     1    77 []    84.4  2.3e-21
MBT        4/4     555   626 ..     1    77 []   150.5    3e-41

Alignments of top-scoring domains:
MBT: domain 1 of 4, from 229 to 307: score 71.1, E = 2.4e-17
                   *->MKLEAvDpqnp...ssicvATVvevlGyrYLrLrfDGwdsdysaDfW
                      MK E+ + + + +++ +++ATV+   Gyr ++Lr++G+++d s+DfW
   mFLJ00162   229    MKVEVLNSDAVlpsRVYWIATVIQAAGYR-VLLRYEGFENDASHDFW 274  

                   chvdSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   c+    d+hP+GWC+ n++ L PP+++  k  +   
   mFLJ00162   275 CNLGTVDVHPIGWCAINSKILVPPRTIHAKFTD    307  

MBT: domain 2 of 4, from 342 to 407: score 113.4, E = 4.4e-30
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      M+LE+vD++++s++++A V++v+G+r LrL +++ dsd+  DfWch+
   mFLJ00162   342    MRLEVVDKTQVSRTRMAVVDTVIGGR-LRLLYEDGDSDD--DFWCHM 385  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   +Sp IhPvGW++++gh ++        +++   
   mFLJ00162   386 WSPLIHPVGWSRRVGHGIK--------MSD    407  

MBT: domain 3 of 4, from 447 to 524: score 84.4, E = 2.3e-21
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLEA+Dp n  sicvAT+ +vl   YL++  DG  s + +D++c++
   mFLJ00162   447    MKLEAIDPLNLGSICVATICKVLLDGYLMICVDGGPSTDGSDWFCYH 493  

                   d.SpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                    +S+ I+P+ +C kn  +L+PP+gy+ + f    
   mFLJ00162   494 AsSHAIFPATFCQKNDIELTPPKGYETQPFA    524  

MBT: domain 4 of 4, from 555 to 626: score 150.5, E = 3e-41
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLEAvD+++p++icvATV++v++++ L ++fDGwd++y  D+W+++
   mFLJ00162   555    MKLEAVDLMEPRLICVATVKRVVHRL-LSIHFDGWDNEY--DQWVDC 598  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   +SpdI+PvGWCe++g++LqPP  +  + ++   
   mFLJ00162   599 ESPDIYPVGWCELTGYQLQPP--VSAEPNT    626  

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