hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj31007/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00157  ( 770 res)   mfj31007

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec6     Exocyst complex component Sec6                1208.8          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec6       1/1      38   761 ..     1   819 []  1208.8        0

Alignments of top-scoring domains:
Sec6: domain 1 of 1, from 38 to 761: score 1208.8, E = 0
                   *->lkqvadlLqrPeqLeklsqykersarkkYasveaqLktmvqkqlegv
                      +++va++LqrP+qL+k++qy++r+arkk asvea+Lk+++q+ql+gv
   mFLJ00157    38    VQRVAGMLQRPDQLDKVEQYRRREARKK-ASVEARLKAAIQSQLDGV 83   

                   rtglkqLetseedvkeirqgldevsklLkgffelidklklvkeasvahsq
                   rtgl+qL+++++dvk+i+q+l++vsk++++++++i++lk+vk+a+v+hsq
   mFLJ00157    84 RTGLSQLHNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQ 133  

                   lakasenldrlfnvpatveeiedlleAELddkeLeksvpnLLeahqkLta
                   la+a+enl+++f+vp++v+e++dl+e   +++        LL+ah+kL++
   mFLJ00157   134 LAAAVENLKNIFSVPEIVRETQDLIE---QGA--------LLQAHRKLMD 172  

                   LErsReealaeageeterntekdqitlvrrFskvdtlseelekqllgilr
                   LE+sR++++ e+++++++n  +d+++++ +F ++++ls+el+kql+++l+
   mFLJ00157   173 LECSRDGLMCEQYRMDSGNK-RDMTLIHGYFGSTQGLSDELAKQLWMVLQ 221  

                   rilelvredeenpellvqalrIVErEEreDqrlqaerdeekseeavleea
                   r+l++vr+d   p+llv+++rI+ErEE++D+r++++              
   mFLJ00157   222 RSLVTVRRD---PTLLVSVVRIIEREEKIDRRILDR-------------- 254  

                   sikklgkkktTarlsdkkPKViEYPtNKGLYqEimltaflppgrPRnWkq
                                   kk                 +t+f+ppgrP+nWk+
   mFLJ00157   255 ----------------KK-----------------QTGFVPPGRPKNWKE 271  

                   kvlrsleesveeRfqrlrgkqledrkeekswLarlLlelgdvileDLqvv
                   k++ +l ++v++R+   +g+q+++r+++k+wL+r+L+++++++l+DL+v+
   mFLJ00157   272 KMFAILDRTVTTRI---EGTQADTRESDKMWLVRHLEIIRKYVLDDLIVA 318  

                   kellaPCfPPsynIfetylnlYHeaLasrLqeLLArseeLeaaeilaLla
                   k+l+++CfPP+y+If+++l++YH+aL++r+q+ LA se+Lea+ei++Ll+
   mFLJ00157   319 KNLMVQCFPPHYEIFKNLLSMYHQALSTRMQD-LA-SEDLEANEIVSLLT 366  

                   WvlnyYpsleedfnfikDmLgnpkLapetedvsqleplLepeqieqLede
                   Wvln+Y+s        ++m+gn++Lape++ vs leplL+p  +++L+d+
   mFLJ00157   367 WVLNTYTS--------AEMMGNVELAPEVD-VSALEPLLSPNIVSELLDT 407  

                   YlsllqakikeWldkalelEvdrWlkretePeqdedGyyhtplpiivfQm
                   Y+s+l+++i++Wl+kale+++++W ++etePe+d+dGyy+t+lp+ivfQm
   mFLJ00157   408 YMSTLTSNIIAWLRKALETDKKDW-SKETEPEADQDGYYQTTLPAIVFQM 456  

                   itqqvqvaaeisqdLekkilvlvlqelmaflqsyqkafiefkeehlrnrl
                   ++q++qvaa+is+dL++k+lvl+lq++++fl++y+++++ +keehlrnr+
   mFLJ00157   457 FEQNLQVAAQISEDLKTKVLVLCLQQMNSFLSRYKDEAQLYKEEHLRNRQ 506  

                   etpedevpagyveYliAiiNnclkcaesaeqlkqkylellskereqelse
                   +++      +yv+Y+iAiiNnc++++es+ +lk+kyl+ +    e+ l  
   mFLJ00157   507 HPH------CYVQYMIAIINNCQTFKESIISLKRKYLKTEA---EEGLCL 547  

                   nleelldgfieiakegvsqLleeiflDPGlqpllkeLftkkWltgssale
                   +++++++++++iakeg+s Llee+flD  l+++l+eL+tkkWl+gs+a++
   mFLJ00157   548 SQPSMDGILDAIAKEGCSSLLEEVFLD--LEQHLNELMTKKWLLGSNAVD 595  

                   tivdTvsDYlqDfkehlrpplfeefleeahrelVleYLraLlrkRlsfks
                   +i++Tv+DY++Df+ ++++p+++++++eahr++V+eYLra+++kR+sf+s
   mFLJ00157   596 IICVTVEDYFNDFA-KIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRS 644  

                   aeereeaaekmkaDaealkelFreyadaeelgstltllektllalaEils
                   aeer+e+aekm+++ae+l++lFr++a+  ++g++++  ++t++a+aE+++
   mFLJ00157   645 AEERKEGAEKMVREAEQLRFLFRKLAS--GFGEDADGHCDTIVAVAEVIK 692  

                   ledpdllslevatLlesYPDirkdhlsaiLalRgDlsrsevkkivqelke
                   l+dp+ll+lev+tL+++YPDir+dh+ a+LalRgD+sr+++++i+++l++
   mFLJ00157   693 LTDPSLLYLEVSTLVSKYPDIRDDHIGALLALRGDASRDMKQTIMETLEQ 742  

                   gpaahriksesqrvlFslilvp<-*
                   gp ++   s+ ++++F++i+vp   
   mFLJ00157   743 GPMQA---SPNYVPIFKEIVVP    761  

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