hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj45154/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00154 ( 1340 res) mfj45154 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- fn3 Fibronectin type III domain 602.2 3.2e-177 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- fn3 1/11 1 89 [. 1 84 [] 38.2 1.8e-07 fn3 2/11 101 186 .. 1 84 [] 68.9 1e-16 fn3 3/11 199 289 .. 1 84 [] 40.0 5.5e-08 fn3 4/11 302 393 .. 1 84 [] 67.8 2.4e-16 fn3 5/11 405 494 .. 1 84 [] 62.3 1e-14 fn3 6/11 507 593 .. 1 84 [] 54.0 3.2e-12 fn3 7/11 606 694 .. 1 84 [] 53.2 5.7e-12 fn3 8/11 707 818 .. 1 84 [] 59.8 5.7e-14 fn3 9/11 830 919 .. 1 84 [] 78.3 1.6e-19 fn3 10/11 931 1020 .. 1 84 [] 53.3 5.2e-12 fn3 11/11 1032 1119 .. 1 84 [] 72.0 1.2e-17 Alignments of top-scoring domains: fn3: domain 1 of 11, from 1 to 89: score 38.2, E = 1.8e-07 *->PsaPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkngg +P+n+++++v+st++++ W+pp+++ ng +gY++ +p++ + mFLJ00154 1 --PPQNVQAEAVNSTTVHFLWNPPPqqfINGINQGYKLLA-WPADAP 44 e.wneltvpgt...ttsytltgLkPgteYevrVqAvnggG.GpeS<-* e+ + +t+ ++ ++ ++ +t+Lk t Y +V ++ G+Gp+S mFLJ00154 45 EtVTVVTIAPDfhgIHHGYITNLKKFTAYFTSVLCFTTPGdGPPS 89 fn3: domain 2 of 11, from 101 to 186: score 68.9, E = 1e-16 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P+a++ l++t++ +tsl +sW+ p + ng i gY++++ + + +++ mFLJ00154 101 PGAVGHLSFTEILDTSLKVSWQEPLeRNGIIMGYQISW-EVYGRNDs 146 wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + t+ +tt++y ++gL t+Y++ V+A++++G G + mFLJ00154 147 RLTHTLNSTTHEYKIQGLSSLTTYTIDVAALTAAGvGVTT 186 fn3: domain 3 of 11, from 199 to 289: score 40.0, E = 5.5e-08 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYev..tyRqpkngg P+aP+nl+++++++ s+tl+ p +g i + v++++ +++ mFLJ00154 199 PGAPSNLVISNISPRSATLQFRPGYdGKTAICRWIVegQV-GAIGDE 244 e....wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* e+ + e +++ ++ +L+P+t Y +r + vn +G++p+S mFLJ00154 245 EewvtLYEEENEPDAQMLEIPNLTPYTHYRFRMRQVNIVGpSPFS 289 fn3: domain 4 of 11, from 302 to 393: score 67.8, E = 2.4e-16 *->P.saPtnltvtdvtstsltlsWsppt.....gngpitgYevtyRqpk P+ aPt ltv+ ++tsl+l+W p ++++ +gn + gY+v+y + + mFLJ00154 302 PdVAPTSLTVRTASETSLRLRWVPLPdsqynGNPESVGYRVKY-WRS 347 ngge.wneltvpgttt.sytltgLkPgteYevrVqAvnggG.GpeS<-* + +++ + v+ ++ t++ L++ teYe+r qA n++G Gp+S mFLJ00154 348 DQPSsALAQVVSDRLErELTIEELEEWTEYELRMQAFNAIGaGPWS 393 fn3: domain 5 of 11, from 405 to 494: score 62.3, E = 1e-14 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ aP+n+++++v+st + l+W ++++ ng i gY+v y + k+ mFLJ00154 405 PsAAPENVSAEAVSSTQILLTWASVPeqdQNGLILGYKVLY-CAKDL 450 ge.wneltvpgttt.sytltgLkPgteYevrVqAvnggG.GpeS<-* +++++ v g+ t+s+ l gL+ + Ye++V A +++G+G +S mFLJ00154 451 DPePRSHVVRGNHTqSALLAGLRKFVVYELQVLAFTRIGnGVPS 494 fn3: domain 6 of 11, from 507 to 593: score 54.0, E = 3.2e-12 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P++P +l++ +v+ t +++ W+pp+++ng+i gY++ yR ++++++ mFLJ00154 507 PGPPVRLVFPEVRLTAVRIVWQPPEePNGVILGYQIAYRLASGSPHt 553 wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* +++ v t +++t t L P + Y +r+ A +++G G++ mFLJ00154 554 FTTVEVGATVRQFTATELAPESAYIFRLSAKTRQGwGEPL 593 fn3: domain 7 of 11, from 606 to 694: score 53.2, E = 5.7e-12 *->PsaPtnltvtdv..tstsltlsWsppt.gngpitgYevtyRqpkngg P +P+ l v + t+ sl+l+W p ++g +pi +++v++R + gg mFLJ00154 606 PAPPRELLVPQAevTARSLRLQWVPGSdGASPIRYFTVQVR-ELPGG 651 ewnelt..vpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ew++++++++ +t + ++ L+P t Y++r++A n++G++ +S mFLJ00154 652 EWQTYSssISHEATACAVERLRPFTSYKLRLKATNDIGdSDFS 694 fn3: domain 8 of 11, from 707 to 818: score 59.8, E = 5.7e-14 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ +P+ +++t+ t++s+ ++W+pp++++ ng ++gY++ yR + + mFLJ00154 707 PgEPPGSVSATPHTTSSVLIQWQPPRdesLNGLLQGYRIYYR-ELES 752 ge........................wneltvpgtttsytltgLkPgteY + + ++++++ ++++ + + + +++ ++++ +++ t+y+lt Lk +++Y mFLJ00154 753 ETgmspepktlkspsalraeltaqssFKTVNSSSSLTTYELTHLKKYRRY 802 evrVqAvnggG.GpeS<-* ev +A+n +G++p S mFLJ00154 803 EVIMTAYNIIGeSPAS 818 fn3: domain 9 of 11, from 830 to 919: score 78.3, E = 1.6e-19 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P aP+n++vt++t++ l ++W+pp++++ ng i+gY+v y +++++ mFLJ00154 830 PaMAPQNVQVTPLTASQLEVTWDPPPpesQNGNIQGYKVYY-WEADS 875 ge....wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++++ + l +p + + +++L+ +t+Y +++ A n++G+Gp S mFLJ00154 876 RNetekMKVLFLPEPV--VKIKDLTSHTKYLISISAFNAAGdGPKS 919 fn3: domain 10 of 11, from 931 to 1020: score 53.3, E = 5.2e-12 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyR..qpkngg P++P+ l ++++tst+l +sW p+ ng ++gY+v y + p+ g mFLJ00154 931 PGPPSFLAFSEITSTTLNVSWGEPSaANGILQGYRVVYEplAPVQGV 977 e.wneltvpgt.ttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++ ++++v+g+ ++ +++L+ g++Y +rVqA++ +++ + mFLJ00154 978 SkVVTVDVKGNwQRWLKVRDLTKGVTYFFRVQARTIAYgPELQ 1020 fn3: domain 11 of 11, from 1032 to 1119: score 72.0, E = 1.2e-17 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P++P+n+ vt ++++ltl+W+ g p tgY ++ R p+++g mFLJ00154 1032 PGSPRNVLVTK-SASELTLQWTEGNaGTTPTTGYVIEAR-PSDEGLw 1076 .wneltvpgttt..sytltgLkPgteYevrVqAvnggG.GpeS<-* + + +++p+++t+ ++ l L+ g++Ye+rV+Avn +G G++S mFLJ00154 1077 dMFAKDIPRSATsyTVDLDKLRQGVTYEFRVVAVNKAGfGEPS 1119 //