hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10098/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00153  ( 505 res)   mpm10098

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RasGEF   Guanine nucleotide exchange factor for Ras-l   295.2    4.8e-84   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RasGEF     1/1      65   325 ..     1   261 []   295.2  4.8e-84

Alignments of top-scoring domains:
RasGEF: domain 1 of 1, from 65 to 325: score 295.2, E = 4.8e-84
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                      ll+++ +++AeQLTl+d elF ++   E+lgs w++r++++ +   p
   mFLJ00153    65    LLDFSVDDVAEQLTLMDVELFLRVRSCECLGSMWSQRDRPGAAGISP 111  

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                    +++a++++fN+v+ +V  ++l ++ l +++Ra+ ++k+I++A+ creL+
   mFLJ00153   112 -TVRATVAQFNTVTGCVLGSVLAAPGLAASQRAQRIEKWIRIAQRCRELR 160  

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   NF+Sl AI+saL+s+pI+RLk +W ++s++ +++f +L+++++++ +N+ 
   mFLJ00153   161 NFSSLRAILSALQSNPIYRLKRSWGAVSREPLSVFRKLSQIFSDE-DNHL 209  

                   nYReaLkscnksp...........nvqppcvPflGvyLkDLtfidegnpd
                    +R+ L+++++  +++ ++++ +++  p+ vP+lG++L+DL+++d++ pd
   mFLJ00153   210 SSRAILSQEETTEdddcpsgslpsKLPPGPVPYLGTFLTDLVMLDTALPD 259  

                   flengtkglvNFeKrrkiakilreirqlqsacqpynlkpnrndiqellra
                    l+    +l+NFeKrrk+ +il+ i+qlq+ cq y l p  + i   lra
   mFLJ00153   260 TLKG---NLINFEKRRKEWEILARIQQLQQRCQRYSLSPR-PPILAALRA 305  

                   srplevlpeeedelyelSlriEPrv<-*
                       ++l+ee   +y +S+ iEP+    
   mFLJ00153   306 ---QRQLSEE--QSYRVSRVIEPPA    325  

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