hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10098/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00153  ( 505 res)   mpm10098

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RasGEF   RasGEF domain                                  216.8    3.2e-61   1
RA       Ras association (RalGDS/AF-6) domain            28.7    0.00014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RasGEF     1/1      66   273 ..     1   227 []   216.8  3.2e-61
RA         1/1     433   505 .]     1    98 []    28.7  0.00014

Alignments of top-scoring domains:
RasGEF: domain 1 of 1, from 66 to 273: score 216.8, E = 3.2e-61
                   *->LllDplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk
                      L+++ +++A+QLTL++ elf+++ + e+Lg        + W+++  +
   mFLJ00153    66    LDFSVDDVAEQLTLMDVELFLRVRSCECLG--------SMWSQRDRP 104  

                   gkeerspnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev
                   g  + sp+ ++t+++fN++t +v  ++l +           + ++ Ra+ 
   mFLJ00153   105 GAAGISPTVRATVAQFNTVTGCVLGSVLAAP---------GLAASQRAQR 145  

                   iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI
                   i+k+I +A++cReL+NF+Sl aI+sAL+s+pIyRLk+ W +v+++ l++ 
   mFLJ00153   146 IEKWIRIAQRCRELRNFSSLRAILSALQSNPIYRLKRSWGAVSREPLSV- 194  

                   feeLnkLmdsdrNfsnyRelLksigplappnLd........ddfvraPCV
                   f +L+ ++++++N+  +R  L+ + +    + d++ ++++       + V
   mFLJ00153   195 FRKLSQIFSDEDNHLSSRAILSQEET----TEDddcpsgslPSKLPPGPV 240  

                   PFfGvYLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-*
                   P++G++L+DL++l+++ pd l+     +nl+NF+Krrk   
   mFLJ00153   241 PYLGTFLTDLVMLDTALPDTLK-----GNLINFEKRRK    273  

RA: domain 1 of 1, from 433 to 505: score 28.7, E = 0.00014
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                         v+rV   ++  + y++il++ ++ a+ V++ +L+K++++ ++ +
   mFLJ00153   433    EARVIRVSINNNHGNLYRSILLTCQDKAPSVVQRALEKHNVPQPWAR 479  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqvrsrFlLrrre
                   dy+L+    ++ +g+ e   +pd +++++++                   
   mFLJ00153   480 DYQLF----QVLPGDREL-LIPDGANVFYAM------------------- 505  

                   d<-*
                       
   mFLJ00153     - -    -    

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