hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00776/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00147 ( 982 res) mbh00776 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- UCH Ubiquitin carboxyl-terminal hydrolase 0.2 7.8e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- UCH 1/1 1 167 [. 1 273 [] 0.2 7.8e-06 Alignments of top-scoring domains: UCH: domain 1 of 1, from 1 to 167: score 0.2, E = 7.8e-06 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl mFLJ00147 - ----------------------------------------------- - RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsgyksvvpsplkflqfkttlgkineefsgymQ mFLJ00147 - -------------------------------------------------- - RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx qDAhEFllfLLdgLhedlnrvnkkpytepesdkrpdkaaeawknhslrne mFLJ00147 - -------------------------------------------------- - RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx slitdlFqGqlesrlkisrLPpiLiihLKRFkydgetgmnkKindkVefP F+y + ++K+nd+ +fP mFLJ00147 1 ------------------------------FDYTTM--HRIKLNDRMSFP 18 RF xxxxxxxxxxxx leLdlssyctae...................................... +eLd+s + + e+++++++++ ++++ +++++ ++++ +++ ++++ ++ mFLJ00147 19 EELDMSTFIDIEdekspqtesctdsgaenegschsdqmsndfstddavde 68 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ....................pplkYeLyaVvvHsGsslsgGHYiayikkk + ++++++++ ++++ ++++l+YeL++V vHsG s+ gGHY+a+ik + mFLJ00147 69 giclesssgsekiskpglekNSLMYELFSVMVHSG-SAAGGHYYACIK-S 116 RF xxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxx kknnkWykfDDekVsevseeevle.................rsssAYiLF ++++Wy f+D++Vs++++e++++++++++++++ ++ +s++AY+L mFLJ00147 117 FSDDQWYSFNDQHVSRITQEDIKKthggssgsrgyyssafaSSTNAYMLI 166 RF x Y<-* Y mFLJ00147 167 Y 167 //