hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp09110/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00139  ( 992 res)   mbp09110

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology (CH) domain                   87.2    3.3e-22   1
LIM      LIM domain                                      24.3    0.00025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1       1    90 [.     1   121 []    87.2  3.3e-22
LIM        1/1     171   230 ..     1    62 []    24.3  0.00025

Alignments of top-scoring domains:
CH: domain 1 of 1, from 1 to 90: score 87.2, E = 3.3e-22
                   *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL
                                     y++         v+itn++t+++ DGla+ca+
   mFLJ00139     1    ---------------YRD---------VSITNMTTSFR-DGLAFCAI 22   

                   lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi
                   l+++rP+li+++   +l +++  eN +la+++ae++ lgi + l+d+eD+
   mFLJ00139    23 LHRHRPDLINFS---ALRKENIYENNKLAFQVAEEQ-LGI-PALLDAEDM 67   

                   vegnpdPDeklvltllwqLirrfq<-*
                   v  +  PD +++lt+++q++++f    
   mFLJ00139    68 VALKV-PDRLSILTYVSQYYNYFH    90   

LIM: domain 1 of 1, from 171 to 230: score 24.3, E = 0.00025
                   *->CagCgkpIydrevvmr..AlnkvwHpeCFrCavCgkpLtegdefyek
                      C+ Cgk ++   +v+r+ A ++ +H++CFrC +C  +L +g  +   
   mFLJ00139   171    CGVCGKHVH---LVQRhlADGRLYHRSCFRCKQCSSTLHSGA-YRAT 213  

                   dg.skelYCkkDYyklfg<-*
                    ++   ++C ++  +  +   
   mFLJ00139   214 GEpGV-FVCTHHSSEVTS    230  

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