hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj07247/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00138  ( 449 res)   msj07247

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH2      Src homology 2 domains                          94.6    1.2e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH2        1/1     348   432 ..     1    87 []    94.6  1.2e-23

Alignments of top-scoring domains:
SH2: domain 1 of 1, from 348 to 432: score 94.6, E = 1.2e-23
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                      +pWYHG isR+eAE+ L+   +++ ++LvR Ses + +y++ +++ +
   mFLJ00138   348    QPWYHGSISRAEAESRLQP--CKEAAYLVRNSESGNSKYSIALKTSQ 392  

                   kvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   ++ H+++ +t+d+k+ l + ++  F+s++e v++Y+  +l+   
   mFLJ00138   393 GCVHIIVAQTKDNKYTLNQ-TSAVFDSIpEVVHYYSNAKLP    432  

//