hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj07247/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00138  ( 449 res)   msj07247

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH2      SH2 domain                                      63.3    5.1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH2        1/1     350   426 ..     1    82 []    63.3  5.1e-15

Alignments of top-scoring domains:
SH2: domain 1 of 1, from 350 to 426: score 63.3, E = 5.1e-15
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      WyhG+IsR+eAE +L+    k+ ++LvR Ses    Y++ +++    
   mFLJ00138   350    WYHGSISRAEAESRLQP--CKEAAYLVRNSESGNSKYSIALKTSQ-- 392  

                   gdrVkHyrIqsldnggyyitggvk.FssLpeLvehY<-*
                        H+++ ++++ +y +      F+s+pe v++Y   
   mFLJ00138   393 --GCVHIIVAQTKDNKYTLNQTSAvFDSIPEVVHYY    426  

//