hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01290/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00137  ( 1396 res)   mbh01290

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   218.1    7.6e-61  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/11     34    75 ..     1    46 []    13.2        4
WD40       2/11     79   150 ..     1    46 []    42.9  4.4e-08
WD40       3/11    175   207 ..     1    46 []     1.9  2.4e+02
WD40       4/11    211   260 ..     1    46 []    13.6      3.5
WD40       5/11    263   303 ..     1    46 []    21.9    0.087
WD40       6/11    310   350 ..     1    46 []    24.5    0.015
WD40       7/11    355   406 ..     1    46 []     3.2  1.6e+02
WD40       8/11    424   459 ..     1    46 []    11.5      7.4
WD40       9/11    462   508 ..     1    46 []    23.1    0.039
WD40      10/11    523   563 ..     1    46 []    49.7  3.9e-10
WD40      11/11    566   606 ..     1    46 []    29.7  0.00039

Alignments of top-scoring domains:
WD40: domain 1 of 11, from 34 to 75: score 13.2, E = 4
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++   rt ++       + +++ sp++     +nl+a g +Dg + +
   mFLJ00137    34    QdCSDRTHTpSEPR--TIFCLTCSPHH-----ENLVAIGYkDGIVVI 73   

                   Wd<-*
                    d   
   mFLJ00137    74 ID    75   

WD40: domain 2 of 11, from 79 to 150: score 42.9, E = 4.4e-08
                   *->t.kllrtlkgHtgespVtsvafspdggss..................
                      ++++++ l+gH++  +++s+a++p +g++  + ++++++++++ +++
   mFLJ00137    79    KgEVIHRLRGHDD--EIHSIAWCPLSGEDclsisqeenseepdipng 123  

                   ........dspnllasgs.DgtirlWd<-*
                   +   +++  ++ +la+gs+D tir+W+   
   mFLJ00137   124 kliaetpiTKGCYLATGSkDQTIRIWS    150  

WD40: domain 3 of 11, from 175 to 207: score 1.9, E = 2.4e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t k    l+          + +  +      p++l+s++  g + lW
   mFLJ00137   175    TvKERLWLT----------LHWPKNQ-----PTQLVSSCfGGELLLW 206  

                   d<-*
                   d   
   mFLJ00137   207 D    207  

WD40: domain 4 of 11, from 211 to 260: score 13.6, E = 3.5
                   *->t.kllrtlk.......gHtgespVtsvafspdggssdspnllasgs.
                      +++  +tl +++ +++ H+    V  ++   +    d+++ll+s s 
   mFLJ00137   211    SwRRKYTLFstsaeghNHSR--IVFNLCSLKTE---DGKQLLLSTSm 252  

                   DgtirlWd<-*
                   D+ +++Wd   
   mFLJ00137   253 DRDVKCWD    260  

WD40: domain 5 of 11, from 263 to 303: score 21.9, E = 0.087
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t +++ tl+   g    +s+afsp +        la g +Dg ir+W
   mFLJ00137   263    TlECCWTLPSLGG--FAYSLAFSPVD-----VGSLAIGVgDGMIRVW 302  

                   d<-*
                   +   
   mFLJ00137   303 N    303  

WD40: domain 6 of 11, from 310 to 350: score 24.5, E = 0.015
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  +   ++g ++   Vt+++++p+      + +la g +Dg++ l+
   mFLJ00137   310    NyDVKNFWQGVKS--KVTALCWHPNK-----EGCLAFGTdDGKVGLY 349  

                   d<-*
                   d   
   mFLJ00137   350 D    350  

WD40: domain 7 of 11, from 355 to 406: score 3.2, E = 1.6e+02
                   *->t.kllrtlkgHtgespVtsvafspdggss.......dspnllasgs.
                      ++ ++++   H++   V+ +a+ p   + + +++++ ++  l+s+++
   mFLJ00137   355    KpPQISSTY-HKK--TVYRLAWGPPVPPMslggegdRPSLTLYSCGg 398  

                   DgtirlWd<-*
                    g +   +   
   mFLJ00137   399 EGVVLQHN    406  

WD40: domain 8 of 11, from 424 to 459: score 11.5, E = 7.4
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+ Ht       +++  dg      ++la g +Dg+i ++
   mFLJ00137   424    TnSIRYKLPVHTE------ISWKGDG------KVLALGNeDGSIEIF 458  

                   d<-*
                       
   mFLJ00137   459 Q    459  

WD40: domain 9 of 11, from 462 to 508: score 23.1, E = 0.039
                   *->t.kllrtlkgHtgespVtsvafspdggss.dspnllasgs.Dgtirl
                      + +ll+t++ H +   V+++ +++ +gs++  + llasgs++  i++
   mFLJ00137   462    NlRLLCTIQQHHK--LVNAIVWHHEHGSRpELSCLLASGSnNAVIYV 506  

                   Wd<-*
                    +   
   mFLJ00137   507 HN    508  

WD40: domain 10 of 11, from 523 to 563: score 49.7, E = 3.9e-10
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++ rtl+gHt+   +ts+a+sp++     + +l+s++ Dgt  +W
   mFLJ00137   523    ItEPYRTLSGHTA--KITSLAWSPHH-----DGRLVSACyDGTAQVW 562  

                   d<-*
                   d   
   mFLJ00137   563 D    563  

	[output cut off at A = 10 top alignments]
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