hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01290/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00137  ( 1396 res)   mbh01290

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       189.5    5.4e-53  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/10     38    75 ..     1    38 []    12.7      5.5
WD40       2/10     81   150 ..     1    38 []    48.0  2.2e-10
WD40       3/10    220   260 ..     1    38 []    13.7      4.2
WD40       4/10    265   303 ..     1    38 []    15.8        1
WD40       5/10    312   350 ..     1    38 []    20.8    0.032
WD40       6/10    356   406 ..     1    38 []     4.4       58
WD40       7/10    426   459 ..     1    38 []     0.4  1.8e+02
WD40       8/10    464   508 ..     1    38 []    18.8     0.13
WD40       9/10    525   563 ..     1    38 []    48.0  2.1e-10
WD40      10/10    568   606 ..     1    38 []    26.0  0.00091

Alignments of top-scoring domains:
WD40: domain 1 of 10, from 38 to 75: score 12.7, E = 5.5
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + +++ +    ++ c+ +sp++ +l+a g  Dg + i d   
   mFLJ00137    38    DRTHTPsEP-RTIFCLTCSPHHENLVAIGYKDGIVVIID    75   

WD40: domain 2 of 10, from 81 to 150: score 48.0, E = 2.2e-10
                   *->eclavl.gHtspVtcvafspd..........................
                      e+++ l+gH + + ++a++p ++++  + + ++++++++ ++++  +
   mFLJ00137    81    EVIHRLrGHDDEIHSIAWCPLsgedclsisqeenseepdipngklia 127  

                   .....sgpllasgSrDgtikiWd<-*
                   +++ + g++la+gS D ti+iW+   
   mFLJ00137   128 etpitKGCYLATGSKDQTIRIWS    150  

WD40: domain 3 of 10, from 220 to 260: score 13.7, E = 4.2
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                         a+ + H+  V  ++    +++ +ll+s S D+ +k Wd   
   mFLJ00137   220    STSAEGhNHSRIVFNLCSLKTedGKQLLLSTSMDRDVKCWD    260  

WD40: domain 4 of 10, from 265 to 303: score 15.8, E = 1
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ec  +l+   ++ +++afsp +   la g  Dg i++W+   
   mFLJ00137   265    ECCWTLpSLGGFAYSLAFSPVDVGSLAIGVGDGMIRVWN    303  

WD40: domain 5 of 10, from 312 to 350: score 20.8, E = 0.032
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++   +g +s Vt+++++p+   +la g +Dg++ ++d   
   mFLJ00137   312    DVKNFWqGVKSKVTALCWHPNKEGCLAFGTDDGKVGLYD    350  

WD40: domain 6 of 10, from 356 to 406: score 4.4, E = 58
                   *->eclavl.gHtspVtcvafspd............sgpllasgSrDgti
                       ++ + + H+++V+ +a+ p+ ++ + +++++ ++ +l s++  g +
   mFLJ00137   356    PPQISStYHKKTVYRLAWGPPvppmslggegdrPSLTLYSCGGEGVV 402  

                   kiWd<-*
                      +   
   mFLJ00137   403 LQHN    406  

WD40: domain 7 of 10, from 426 to 459: score 0.4, E = 1.8e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         + l+ H    t +++  d g++la g +Dg+i i+    
   mFLJ00137   426    SIRYKLpVH----TEISWKGD-GKVLALGNEDGSIEIFQ    459  

WD40: domain 8 of 10, from 464 to 508: score 18.8, E = 0.13
                   *->eclavl.gHtspVtcvafspd......sgpllasgSrDgtikiWd<-
                       +l +++ H + V+++ ++++ ++ ++ ++llasgS +  i++ +  
   mFLJ00137   464    RLLCTIqQHHKLVNAIVWHHEhgsrpeLSCLLASGSNNAVIYVHN   508  

                   *
                    
   mFLJ00137     -   -    

WD40: domain 9 of 10, from 525 to 563: score 48.0, E = 2.1e-10
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e+ ++l+gHt+ +t++a+sp++  +l+s++ Dgt  +Wd   
   mFLJ00137   525    EPYRTLsGHTAKITSLAWSPHHDGRLVSACYDGTAQVWD    563  

WD40: domain 10 of 10, from 568 to 606: score 26.0, E = 0.00091
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e+l  ++gH +   cva+sp +++++ sg +D +++ W    
   mFLJ00137   568    EPLFNFrGHRGRLLCVAWSPVDPECIYSGADDFCVYRWL    606  

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