hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00646/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00136  ( 857 res)   mph00646

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TMC      TMC domain                                     229.3    5.7e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TMC        1/1     586   692 ..     1   116 []   229.3  5.7e-65

Alignments of top-scoring domains:
TMC: domain 1 of 1, from 586 to 692: score 229.3, E = 5.7e-65
                   *->CWETfVGQElYKLvifDFlftllvtflveFlRrllvrylsskwlWDl
                      CWE+fVGQElY+++++DF+f+ll+++++e+++rl++++         
   mFLJ00136   586    CWEDFVGQELYRFMVVDFIFMLLDSLFGELVWRLISEKK-------- 624  

                   EltflgrqEFdvarNVLeLIYgQTlvWiGiFFcPLLPaIntiKlfilFYi
                    l++ +++EFd+arNVL+LIYgQTl+W+G++F+PLLPa++++ l++lF i
   mFLJ00136   625 -LKRGQKPEFDIARNVLDLIYGQTLTWLGVLFSPLLPAVQILRLLFLFHI 673  

                   KKisLltNcrPpsrpFRAS<-*
                   KK sL+ Nc++p+rp+ AS   
   mFLJ00136   674 KKASLMANCQAPRRPWLAS    692  

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